Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0280 ATGGGAAGGCAACCTTGTTGTGACAAAGTTGGTTTGAAGAAGGGACCATGGACTACAGATGAGGACAACAAACTCATCAACTTCATTCTCACCAATGGCCAATGTTGTTGGAGAACTGTCCCTAAGCTAGCAGGGTTGTTTAGGTGTGGGAAGAGTTGCAGGCTCAGGTGGATAAACTATCTGAGGCCAGACTTAAAGAGAGGTCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTAAAATTGGCAACAGATGGTCTAAGATTGCTTCTCATCTACCTGGAAGAACTGATAATGAGATCAAAAACCATTGGAATACACACATTAAGAAAAAACTCAAGAAAATGGGCATTGATCCTGTCACTCACAAACCACTTTCTAATATTGCAACTCACCAAACTCAAGATCAAAGTAAACAACAACTATACCAATCACTGGAAAAAGAGCAGGAGAATCAACAACCAGTTTCAGTTGACTTTGACCCTATATTTGAACATAAATTTAACCAAAATAAGGAGCTAAAGAAACAAGAGACTTCAATTGGGTCATCAAACATCACTGAAGCTGAAGTGGAAGACAACATTATAACATCCTTATTTGACACAATGGATGATGTCATGAATGGGTTTTGCACTGATGAAGTTCCAATAATTGAACCACATGAGATTCTAGTTCCATGTGTTCCTTCTTCTTCATCAACTTCCACATCTTCATCAAATTCAACCAACTTCCTTGAAAAACTTCAGTTGCCAGATTTTGAGTGGTCTTGTAATTACAATAGTGTTAACAATAACAATGATGCCAACAATAATGACAATATGGAATTATGGGATGATGATGATGACTTTATTATCAGTTTGAATTTTCTGATTAATGGTGATGATGGTGGTGATAAAAAGCAAGTGTTTGATGCTCCTCATAGTCAGTGCTCAAAAATGGCCATGGAGTCAGAATCTTGGGCATATGGGTTGTTTTGA 987 0.3759 MGRQPCCDKVGLKKGPWTTDEDNKLINFILTNGQCCWRTVPKLAGLFRCGKSCRLRWINYLRPDLKRGLLSEYEEKMVIDLHAKIGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSNIATHQTQDQSKQQLYQSLEKEQENQQPVSVDFDPIFEHKFNQNKELKKQETSIGSSNITEAEVEDNIITSLFDTMDDVMNGFCTDEVPIIEPHEILVPCVPSSSSTSTSSSNSTNFLEKLQLPDFEWSCNYNSVNNNNDANNNDNMELWDDDDDFIISLNFLINGDDGGDKKQVFDAPHSQCSKMAMESESWAYGLF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0280 328 Gene3D - 71 116 - -
Lal22g0280 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal22g0280 328 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lal22g0280 328 Gene3D - 11 67 - -
Lal22g0280 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal22g0280 328 CDD SANT 16 61 IPR001005 -
Lal22g0280 328 MobiDBLite consensus disorder prediction 131 157 - -
Lal22g0280 328 SMART sant 66 114 IPR001005 -
Lal22g0280 328 SMART sant 13 63 IPR001005 -
Lal22g0280 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal22g0280 328 CDD SANT 74 112 IPR001005 -
Lal22g0280 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal22g0280 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal22g0280 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal22g0280 328 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 296 - -
Lal22g0280 328 PANTHER MYB TRANSCRIPTION FACTOR 1 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0280 Lal-Chr22 1780669 1782871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0280 1 328 MYB Transcription Factor Family AT5G16600 45.879 1.20e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal22g0280 Myb_DNA-binding 3.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0280 K09422 - gmx:100792103 454.136