Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0279 ATGGCCACTGAAGAGGTTAATAAACCTCCATCACTTCCTCCATACCCTGAGATGATAATGAAAGCAGTGGAAGCACTGAATGACCAGAATGGATCTAACAAATCAGCAATAGCAAGTTACATAGAATCAACCTATGGTGAGTTGCCAGCAGGGCACACAGCACTTCTCACTCATCACCTTCACAAGATGAAAGAGAGTGGTGAACTTGTGTTCTTGAAGAACAATTACATGAAACCTGACCCTAGTGCCCCACCAAAGAGAGGTCGTGGTAGGCCACCAAAACCAAAGGCTCATGTGCCCCCTGGCACTGTTGTGTCCCCACCAAGGCCAAGGGGTCGCCCCCCAAAGGACCCTAATGCTCCGCCAACTGCTAAGCTTTCAAGTGGAAGTGGAAGGCCAAGAGGAAGGCCTAAGAAGATTGCTCGGGGTGTGCCGCCGCCGCCATCGGCAGAAGCTGCACCTGCCGGTAGTGGAAGGCCCAGAGGTAGGCCTCCCAAGGTGAAGCCTCAATTGACAGAAGTTAGTGTTGAATCATAG 537 0.5121 MATEEVNKPPSLPPYPEMIMKAVEALNDQNGSNKSAIASYIESTYGELPAGHTALLTHHLHKMKESGELVFLKNNYMKPDPSAPPKRGRGRPPKPKAHVPPGTVVSPPRPRGRPPKDPNAPPTAKLSSGSGRPRGRPKKIARGVPPPPSAEAAPAGSGRPRGRPPKVKPQLTEVSVES 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0279 178 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Lal22g0279 178 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Lal22g0279 178 PRINTS AT-hook-like domain signature 129 139 IPR017956 GO:0003677
Lal22g0279 178 PANTHER HISTONE H1 1 174 - -
Lal22g0279 178 PANTHER HMG-Y-RELATED PROTEIN A 1 174 IPR031059 GO:0003677|GO:0005634
Lal22g0279 178 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Lal22g0279 178 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Lal22g0279 178 SMART AT_hook_2 158 170 IPR017956 GO:0003677
Lal22g0279 178 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Lal22g0279 178 PRINTS High mobility group protein (HMGY) signature 106 118 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lal22g0279 178 PRINTS High mobility group protein (HMGY) signature 133 144 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lal22g0279 178 PRINTS High mobility group protein (HMGY) signature 147 166 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lal22g0279 178 Pfam linker histone H1 and H5 family 13 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal22g0279 178 MobiDBLite consensus disorder prediction 95 121 - -
Lal22g0279 178 MobiDBLite consensus disorder prediction 72 178 - -
Lal22g0279 178 Gene3D - 7 91 IPR036388 -
Lal22g0279 178 Pfam AT hook motif 108 119 IPR017956 GO:0003677
Lal22g0279 178 Pfam AT hook motif 86 94 IPR017956 GO:0003677
Lal22g0279 178 Pfam AT hook motif 158 169 IPR017956 GO:0003677
Lal22g0279 178 Pfam AT hook motif 131 141 IPR017956 GO:0003677
Lal22g0279 178 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal22g0279 178 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal22g0279 178 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0279 Lal-Chr22 1770851 1772211 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0279 - - cpap:110809708 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0279 22 1770851 1772211 Lal6g0301 6 1931955 1933559 LSH