Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0275 ATGGGTTGCTGCGTTAGTGCTAGCAGAATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGAGATCAAAAGATGTTAGCAAAGAAGAGGATGGTCTGAGTGGTTTGAGCACCAAGGTCTCCATTCCTTCTGTGCCTCAAACTCCTCGGACCGAAGGTGAGATCTTGAAGTCATCTCATATGAAGAGCTTTGCCTTTAGTGAGCTAAAAACTGCTACGCAGAACTTTCGTCCAGATAGCGTGGTGGGTGAAGGTGGGTTTGGTTGTGTGTTCAAGGGATGGATTGATGAGCAGACACTTGCACCTGTTAGACCAGGGACTGGAATACTCATTGCTGTGAAGAGGCTTAACCAAGAAGGTTCACAGGGACACAGTGAATGGTTGACAGAAATCAACTATCTGGGGCAGCTGCGTCATCCTAATCTTGTGAAACTCATTGGCTACTGCTTAGAGGATGAACATAGACTTTTGGTGTATGAGTTTTTGTCCAAGTGCAGCTTGGATAATCATCTATTTAGGAGGACTTCTTACGTTGAACCACTTTCTTGGAAAATTCGTATGAAGGTTGCCCTCGATGCTGCTAAAGGTCTTGCATTTCTTCACAGTGATGAAGCAAAAGTGATATATCGAGACTTTAAAACATCTAATATCTTGCTCGATTCGAACTATAATGCAAAACTTTCGGATTTTGGCTTGGCAAAAGATGGACCAGCTGGTGATCAGAGTCATGTCTCTACAAGGGTAATGGGCACATATGGCTATGCCGCCCCTGAATATATGGCTACAGGTCACTTGACGAAAAAGAGTGATGTATACAGCTTTGGGGTTGTTCTACTAGAAATCATGTCAGGCAAACGCGCCCTAGATACCAACAGGCCATCAGGGGAAAGCAATCTTATTGAATGGGCCAAACCTTACCTCAACCGCAAACGTAGGATCTTTCAAGTTATGGATGCCCGCATCGAAGGCCACTACACGGTCCATGATGCAATGAAAGTGGCTGACCTTGTAATTCAATGCATATCCGTGGAACCAAGATTTAGACCAAAGATGGAAGAGGTGGTAGTAGCTTTAGAGCAACTTCAGGATTCTGATAAAAGGAGTGAACATGGCTCAAGCAGCAGTGGCTCAAGCAGTAGTGGCCCAAGACAACATAGAAGAAGATAA 1164 0.4476 MGCCVSASRIKAESPPRNGLRSKDVSKEEDGLSGLSTKVSIPSVPQTPRTEGEILKSSHMKSFAFSELKTATQNFRPDSVVGEGGFGCVFKGWIDEQTLAPVRPGTGILIAVKRLNQEGSQGHSEWLTEINYLGQLRHPNLVKLIGYCLEDEHRLLVYEFLSKCSLDNHLFRRTSYVEPLSWKIRMKVALDAAKGLAFLHSDEAKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPAGDQSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDTNRPSGESNLIEWAKPYLNRKRRIFQVMDARIEGHYTVHDAMKVADLVIQCISVEPRFRPKMEEVVVALEQLQDSDKRSEHGSSSSGSSSSGPRQHRRR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0275 387 MobiDBLite consensus disorder prediction 1 37 - -
Lal22g0275 387 Pfam Protein tyrosine and serine/threonine kinase 79 356 IPR001245 GO:0004672|GO:0006468
Lal22g0275 387 PANTHER KINASE 1B 26 386 - -
Lal22g0275 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Lal22g0275 387 MobiDBLite consensus disorder prediction 16 31 - -
Lal22g0275 387 PANTHER OS01G0588500 PROTEIN-RELATED 26 386 - -
Lal22g0275 387 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0275 387 Gene3D Transferase(Phosphotransferase) domain 1 161 379 - -
Lal22g0275 387 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Lal22g0275 387 SUPERFAMILY Protein kinase-like (PK-like) 53 358 IPR011009 -
Lal22g0275 387 MobiDBLite consensus disorder prediction 358 387 - -
Lal22g0275 387 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0275 Lal-Chr22 1752129 1755506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0275 45 357 Glycoside Hydrolase AT3G07070 47.077 3.38e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal22g0275 PK_Tyr_Ser-Thr 4.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0275 - - gmx:100800735 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0275 22 1752129 1755506 Lal22g0275 22 1752129 1755506 ECH
Lal18g1320 18 15680741 15687461 Lal22g0275 22 1752129 1755506 LSH
Lal5g1180 5 14573322 14576986 Lal22g0275 22 1752129 1755506 PCT
Lal18g1320 18 15680741 15687461 Lal22g0275 22 1752129 1755506 PCT
Lal22g0275 22 1752129 1755506 Lal5g1180 5 14573322 14576986 PCT
Lal22g0275 22 1752129 1755506 Lal18g1320 18 15680741 15687461 PCT