Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0274 ATGCGTAGGAACAGTCCTGGATACTATAGTCCTCCCAGAAGAGGATACGGTGGTAGAGGGAGATCACCACCGCCGCCACCTCCTCCTTCTAGGAGAGGACACGGTGGTGGAGGAGGTAGACGCAGAGAAAGCAACAATGGAAGCCTTTTGGTGAGGAACATTCCCCTCGATTGTCGATCTGAGGAACTTCGAGTCCCCTTCGAGAGATTTGGTCCGGTTCGTGATGTCTACATTCCAAAGGACTATTACTCAGGTGTTAGAATGAAGCTCCACTTTTTTCCATACAGACAACCCCGCGGATTTGCATTTGTGCAGTTTGTCGATGCTTATGATGCATCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCCGTAGTTGTGGCTGCAGAGACAAGAAAGAGACCAGAGGAGATGCGCCATAGGACTAGTAGGTTCAGAGGATCAGGGAACTATGGGGGGCGAAGGTCTTCACATTATGGGCGTTCTCGATCTCGCTCAATTTCCAGATCTCGCTCACGCTCACCACCTTATCATGCTGGTTCTAGAAACCGATATCACTCAAGGTCCTATTCTCCTGCCCCTAGACGGCATAGTGACTATTCTGTTTCCCCTAGAAGGCCAGTGGAGCATCCAAGATCACCAAGAAGTCCTCTTAGGGAGCGAGATGGTGATCAAAACCGCAGGTCGTATTCTCCTGGGGAGAGAGATGGTGATCAAAACCGCAGGTCATATTCTCCACCTTATGGTAATGATGCTGATCAGAACCCAAACAACGGATATGCAGATGGAAATCAAGTAGAGCATCAAGATCACCCCCTGGATCTAGATCAAGGACTCCTGATTTGTCACCCAGGCATGGAAGATGAGGTTGTTTGGCAACGTGCTGCTGGGTTTTGTACAACTCCTTAA 927 0.4898 MRRNSPGYYSPPRRGYGGRGRSPPPPPPPSRRGHGGGGGRRRESNNGSLLVRNIPLDCRSEELRVPFERFGPVRDVYIPKDYYSGVRMKLHFFPYRQPRGFAFVQFVDAYDASEAQYHMNRQIFAGREISVVVAAETRKRPEEMRHRTSRFRGSGNYGGRRSSHYGRSRSRSISRSRSRSPPYHAGSRNRYHSRSYSPAPRRHSDYSVSPRRPVEHPRSPRSPLRERDGDQNRRSYSPGERDGDQNRRSYSPPYGNDADQNPNNGYADGNQVEHQDHPLDLDQGLLICHPGMEDEVVWQRAAGFCTTP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0274 308 MobiDBLite consensus disorder prediction 249 270 - -
Lal22g0274 308 MobiDBLite consensus disorder prediction 205 247 - -
Lal22g0274 308 SMART rrm1_1 48 132 IPR000504 GO:0003723
Lal22g0274 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 129 IPR000504 GO:0003723
Lal22g0274 308 PANTHER OS02G0252100 PROTEIN 23 248 - -
Lal22g0274 308 Gene3D - 40 195 IPR012677 -
Lal22g0274 308 MobiDBLite consensus disorder prediction 138 276 - -
Lal22g0274 308 MobiDBLite consensus disorder prediction 1 48 - -
Lal22g0274 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 136 IPR000504 GO:0003723
Lal22g0274 308 SUPERFAMILY RNA-binding domain, RBD 43 163 IPR035979 GO:0003676
Lal22g0274 308 MobiDBLite consensus disorder prediction 18 32 - -
Lal22g0274 308 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0274 Lal-Chr22 1748124 1751551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0274 15 120 Eukaryotic Initiation Factors Gene Family AT3G11400 33.962 7.73e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0274 K12900 - gmx:100804294 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0274 22 1748124 1751551 Lal22g0274 22 1748124 1751551 ECH
Lal18g1322 18 15690812 15695060 Lal22g0274 22 1748124 1751551 LSH
Lal22g0274 22 1748124 1751551 Lal6g0284 6 1860186 1864674 LSH