Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal22g0274 | ATGCGTAGGAACAGTCCTGGATACTATAGTCCTCCCAGAAGAGGATACGGTGGTAGAGGGAGATCACCACCGCCGCCACCTCCTCCTTCTAGGAGAGGACACGGTGGTGGAGGAGGTAGACGCAGAGAAAGCAACAATGGAAGCCTTTTGGTGAGGAACATTCCCCTCGATTGTCGATCTGAGGAACTTCGAGTCCCCTTCGAGAGATTTGGTCCGGTTCGTGATGTCTACATTCCAAAGGACTATTACTCAGGTGTTAGAATGAAGCTCCACTTTTTTCCATACAGACAACCCCGCGGATTTGCATTTGTGCAGTTTGTCGATGCTTATGATGCATCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCCGTAGTTGTGGCTGCAGAGACAAGAAAGAGACCAGAGGAGATGCGCCATAGGACTAGTAGGTTCAGAGGATCAGGGAACTATGGGGGGCGAAGGTCTTCACATTATGGGCGTTCTCGATCTCGCTCAATTTCCAGATCTCGCTCACGCTCACCACCTTATCATGCTGGTTCTAGAAACCGATATCACTCAAGGTCCTATTCTCCTGCCCCTAGACGGCATAGTGACTATTCTGTTTCCCCTAGAAGGCCAGTGGAGCATCCAAGATCACCAAGAAGTCCTCTTAGGGAGCGAGATGGTGATCAAAACCGCAGGTCGTATTCTCCTGGGGAGAGAGATGGTGATCAAAACCGCAGGTCATATTCTCCACCTTATGGTAATGATGCTGATCAGAACCCAAACAACGGATATGCAGATGGAAATCAAGTAGAGCATCAAGATCACCCCCTGGATCTAGATCAAGGACTCCTGATTTGTCACCCAGGCATGGAAGATGAGGTTGTTTGGCAACGTGCTGCTGGGTTTTGTACAACTCCTTAA | 927 | 0.4898 | MRRNSPGYYSPPRRGYGGRGRSPPPPPPPSRRGHGGGGGRRRESNNGSLLVRNIPLDCRSEELRVPFERFGPVRDVYIPKDYYSGVRMKLHFFPYRQPRGFAFVQFVDAYDASEAQYHMNRQIFAGREISVVVAAETRKRPEEMRHRTSRFRGSGNYGGRRSSHYGRSRSRSISRSRSRSPPYHAGSRNRYHSRSYSPAPRRHSDYSVSPRRPVEHPRSPRSPLRERDGDQNRRSYSPGERDGDQNRRSYSPPYGNDADQNPNNGYADGNQVEHQDHPLDLDQGLLICHPGMEDEVVWQRAAGFCTTP | 308 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal22g0274 | 308 | MobiDBLite | consensus disorder prediction | 249 | 270 | - | - | |
Lal22g0274 | 308 | MobiDBLite | consensus disorder prediction | 205 | 247 | - | - | |
Lal22g0274 | 308 | SMART | rrm1_1 | 48 | 132 | IPR000504 | GO:0003723 | |
Lal22g0274 | 308 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 49 | 129 | IPR000504 | GO:0003723 | |
Lal22g0274 | 308 | PANTHER | OS02G0252100 PROTEIN | 23 | 248 | - | - | |
Lal22g0274 | 308 | Gene3D | - | 40 | 195 | IPR012677 | - | |
Lal22g0274 | 308 | MobiDBLite | consensus disorder prediction | 138 | 276 | - | - | |
Lal22g0274 | 308 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Lal22g0274 | 308 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 47 | 136 | IPR000504 | GO:0003723 | |
Lal22g0274 | 308 | SUPERFAMILY | RNA-binding domain, RBD | 43 | 163 | IPR035979 | GO:0003676 | |
Lal22g0274 | 308 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
Lal22g0274 | 308 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 23 | 248 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal22g0274 | Lal-Chr22 | 1748124 | 1751551 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal22g0274 | 15 | 120 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 33.962 | 7.73e-06 | 45.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal22g0274 | K12900 | - | gmx:100804294 | 293.893 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal22g0274 | 22 | 1748124 | 1751551 | Lal22g0274 | 22 | 1748124 | 1751551 | ECH | |
Lal18g1322 | 18 | 15690812 | 15695060 | Lal22g0274 | 22 | 1748124 | 1751551 | LSH | |
Lal22g0274 | 22 | 1748124 | 1751551 | Lal6g0284 | 6 | 1860186 | 1864674 | LSH |