Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal22g0272 | ATGGCAATTGGGTTCATGGAGGTGCAGCTTGTCAAAGCAAAGGGCCTATATGACACTGATAAGTTTGGTAGAATGGACCCCTATGTTCTGATACAATACAAAGGCCAAGAGAAGAGGAGCATTGTTGCTAAGGGCCAAGGCAGAAATCCAGTATGGAATGAGAAATTTTTGTTCAAAGTAGAATACCCTGGATTGGATAATAGATACAAGGTCATCCTCAAAATCATGGACAAAGATAGCTTATCTGCAGATGACTTTGTTGGACAAGCCATAATCTATGTAGAGGATTTATTGGCTCAAGGGGTAGAAAGTGGAGGAGCTAAACTACAGACTCTAAAGTATAGAGTGGTTCGTGAAAACCAATCTTATTGTGGCGAAATTGATGTTGGTATAACCTTCACCCCAAAGGTGGAAGAGGAATTTGTTGGAGAAGACATTGGAGGATGGAAGGAAAGTGGCATATGA | 465 | 0.4108 | MAIGFMEVQLVKAKGLYDTDKFGRMDPYVLIQYKGQEKRSIVAKGQGRNPVWNEKFLFKVEYPGLDNRYKVILKIMDKDSLSADDFVGQAIIYVEDLLAQGVESGGAKLQTLKYRVVRENQSYCGEIDVGITFTPKVEEEFVGEDIGGWKESGI | 154 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal22g0272 | 154 | ProSiteProfiles | C2 domain profile. | 1 | 107 | IPR000008 | - | |
| Lal22g0272 | 154 | PANTHER | C2 DOMAIN-CONTAINING | 1 | 153 | - | - | |
| Lal22g0272 | 154 | SMART | C2_3c | 5 | 106 | IPR000008 | - | |
| Lal22g0272 | 154 | Gene3D | C2 domain | 2 | 136 | IPR035892 | - | |
| Lal22g0272 | 154 | Pfam | C2 domain | 6 | 103 | IPR000008 | - | |
| Lal22g0272 | 154 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 138 | IPR035892 | - | |
| Lal22g0272 | 154 | PANTHER | ELICITOR-RESPONSIVE PROTEIN 1 | 1 | 153 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal22g0272 | Lal-Chr22 | 1742299 | 1744090 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal22g0272 | 3 | 109 | C2H2 Transcription Factor Family | AT4G21160 | 31.776 | 5.50e-11 | 57.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal22g0272 | - | - | gmx:100791344 | 252.677 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal22g0272 | 22 | 1742299 | 1744090 | Lal22g0272 | 22 | 1742299 | 1744090 | ECH | |
| Lal22g0272 | 22 | 1742299 | 1744090 | Lal6g0283 | 6 | 1857452 | 1858906 | LSH |