Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0267 ATGACATCCCATTGGTGCTATAGGTGTAACAGATTCGTCAGGTTATGGCGAAACGACATGGTAAGGTGTCCCGATTGCGACAGCGGATTCCTCGAAGCGATCCAACCTCCAATGCAATCTGTCCACGTGGAAAATCGCATCCCAAGGCACCCCAATTCCCGCCAATCTCGTCATCGTCACTGCATAAACATCGTCCATGAACGTTCATCGTACAACAACCCAGTCATTATGCGAGGCAGCACAAGCCGCCAGAGAGAAGAAATTACTCGTCGTGATTTCGAGCTTTTCTATGGAGATGGTGTAGGTTCTGGTCATAGACCCTTGCCTCCTACCATGTCTGATTTTATTCTTGATTCTGGATTCGACAGAGTGTTGGAACAGCTTTCTCAGGTAGAGAGCAATAATGTTAGCGGCGGTGAGAGACAAGAAGAGGAAAACCGCCACCGTCCTGCGTCGAAACAGGCCGTGGATTCCTTGCTGGAAGTAGAGATTGATCACAAACACTTGATCTTGGACTCACATTGTGCCGTTTGTAAAGAGCCTTTTCAACTTGGCTATGCAGCGAAGGAAATTCCATGCAAGCATATATACCACTCTGAATGCATATTACCATGGCTTGCGCTTCGTAATTCATGCCCGGTTTGTCGCCATGAGTTACTCTCAGATGATGATAATCATCAAATTGAGAACGAACGCGCTGCACGCGCAATAGGGCATGAAGAAAACACGGGGTTAACGATTTGGAGGTTAAGGGGTGGTGGTTATGCAGTGGGAAGATTTTATGGTGGAAGAAATGGCGATGATGAGAGAGAGCTTCCTCTTGTTTACACTGAAATGGATTATGGGTTAAACAATTTTGTTGGTGAACCAAGGACAAGGAGGATTACTTGGACGGTGTCACCACCTAGAGGGAGGGAAAGGAATAATAATGGTAAGTTGCGTAGAATGTTTGGGAATTTGTTTTCTTGCTTCAGAAATGAAGATGGTGGAGTTAGAGTTCAGCACTCGAATTCCATCATTCAAGATTCAATACCATTGAGGAGTGATACATCAACTCCTTCTCTACGTTCACGCAGAACATGGTCTATGGATGTAAACAGTGGAATGAGTGCATGGTGA 1119 0.4558 MTSHWCYRCNRFVRLWRNDMVRCPDCDSGFLEAIQPPMQSVHVENRIPRHPNSRQSRHRHCINIVHERSSYNNPVIMRGSTSRQREEITRRDFELFYGDGVGSGHRPLPPTMSDFILDSGFDRVLEQLSQVESNNVSGGERQEEENRHRPASKQAVDSLLEVEIDHKHLILDSHCAVCKEPFQLGYAAKEIPCKHIYHSECILPWLALRNSCPVCRHELLSDDDNHQIENERAARAIGHEENTGLTIWRLRGGGYAVGRFYGGRNGDDERELPLVYTEMDYGLNNFVGEPRTRRITWTVSPPRGRERNNNGKLRRMFGNLFSCFRNEDGGVRVQHSNSIIQDSIPLRSDTSTPSLRSRRTWSMDVNSGMSAW 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0267 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 221 IPR013083 -
Lal22g0267 372 ProSiteProfiles Zinc finger RING-type profile. 175 216 IPR001841 -
Lal22g0267 372 SUPERFAMILY RING/U-box 155 225 - -
Lal22g0267 372 SMART ring_2 175 215 IPR001841 -
Lal22g0267 372 CDD RING-H2_RNF181 175 219 - -
Lal22g0267 372 Pfam zinc-ribbon 2 34 IPR039525 GO:0061630
Lal22g0267 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 312 - -
Lal22g0267 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 312 - -
Lal22g0267 372 MobiDBLite consensus disorder prediction 132 152 - -
Lal22g0267 372 Pfam Ring finger domain 174 216 IPR001841 -
Lal22g0267 372 MobiDBLite consensus disorder prediction 138 152 - -
Lal22g0267 372 Pfam Protein of unknown function (DUF1117) 244 341 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0267 Lal-Chr22 1686911 1688029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0267 107 227 C3H Transcription Factor Family AT5G01980 40.496 1.61e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0267 - K11982 gmx:100807324 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0267 22 1686911 1688029 Lal5g1173 5 14446319 14447485 ECH
Lal9g1598 9 18344011 18346264 Lal22g0267 22 1686911 1688029 ECH
Lal22g0267 22 1686911 1688029 Lal22g0267 22 1686911 1688029 ECH