Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0260 ATGGCTGGAATTTGTTGTGGTGTTGTTGAAGGAGAAACCGCAGCTCCAATTGCTTCTTCCTCACTCCGACGCCGGAGTTCGGATCTGTTCCCTTTGAAATATATCGCCGATATGGCAGTTCCGTCATCCGAAGGTAGTAGCTGGAAACGCCAGAAGCTCGAATCATATCCACAGCTACGTGAATACGCTAACACAGTCCAAAATTGCAAATCAAATCTTACTATAGATAATAACGAAGAGCAAAATAAGGAATCCAAGGGACACAACCAAGTTGCTATTGTTTCGGAAATTCCTACGTTAGAAAACCAGGTTGAGGTAGAAGAGTGTCCAAAGTACGGAGTCACGTCGGTTTGTGGTAGAAGAAGGGATATGGAAGACGCTGTTTCAGTGCATCCATCCTTCTGTTCACAAAACAGCAATACTGAAAATCAAAATCAAATTCAAGATGAGAAGAGGTTCCATTTCTTCGGTGTCTATGACGGTCATGGATGTTCTCACGTAGCGACCATGTGCAGAGAGAGGCTACATGGGATTGTGAAGGAAGAGATTGAAAAAGCAGAAGAGAATTTGGATTGGAAATCCACCATGGAACACTGCTTCGATCTCATGGACAAGGAGGTGGAGCGGAGGACCCACACCAAAGACACCCCCACTTGCAAGTGCGAGCTCCACACTCCCCACTCTGACGCCGTCGGATCCACCGCCGTCACCGCCGTTCTTACGCCACAGAAGATAATCATCGCAAACTGCGGCGACTCACGCGCCGTTCTATGCCGCAACGGCGTTGCCATCCCCCTCTCTTCCGATCACAAGGTCCCGCGTGCATGTAAAGCGGGAATAACTTATGTTGATCGTGCTGGTTCCACTACGAGTGGTGAAAAGTTATTAATAGTTGTGGGCCCGCGCCCGGACCGACCCGACGAGTTGGTTCGTGTTGAAGCCGCGGGAGGGCGCGTGATCTATTGGGATGGTGCTAGAGTGCTTGGTGTGCTTGCTATGTCCAGAGCAATAGGGGACAATTATCTAAAACCGTATGTAATTTCGGAACCTGAGGTAACAGTAACGGGGAGGAGTGAAGAGGATGAGTGTTTGATACTAGCGAGTGATGGGCTTTGGGATGTGGTGTCAAACGACACCGCATGTGGGGTGGTGCGGACGTGTCTTAAGGCGAAGCAGAAGGCCGTGTCGCCGCCAGGGTCTCCGGGAAATCACATGGCGGCGGAGGGATCTGATAAGGCGTGCTCAGATGCATCAATTTTGTTGACCAAGTTGGCGTTGGCGAGGCATAGCTCAGACAATGTGAGTGTGGTGGTAGTTGATTTGAGGAGAGATCGTTAG 1338 0.4993 MAGICCGVVEGETAAPIASSSLRRRSSDLFPLKYIADMAVPSSEGSSWKRQKLESYPQLREYANTVQNCKSNLTIDNNEEQNKESKGHNQVAIVSEIPTLENQVEVEECPKYGVTSVCGRRRDMEDAVSVHPSFCSQNSNTENQNQIQDEKRFHFFGVYDGHGCSHVATMCRERLHGIVKEEIEKAEENLDWKSTMEHCFDLMDKEVERRTHTKDTPTCKCELHTPHSDAVGSTAVTAVLTPQKIIIANCGDSRAVLCRNGVAIPLSSDHKVPRACKAGITYVDRAGSTTSGEKLLIVVGPRPDRPDELVRVEAAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVISEPEVTVTGRSEEDECLILASDGLWDVVSNDTACGVVRTCLKAKQKAVSPPGSPGNHMAAEGSDKACSDASILLTKLALARHSSDNVSVVVVDLRRDR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0260 445 Gene3D - 100 445 IPR036457 -
Lal22g0260 445 ProSitePatterns PPM-type phosphatase domain signature. 155 163 IPR000222 GO:0043169
Lal22g0260 445 CDD PP2Cc 111 389 IPR001932 -
Lal22g0260 445 ProSiteProfiles PPM-type phosphatase domain profile. 111 441 IPR001932 -
Lal22g0260 445 SMART PP2C_4 101 439 IPR001932 -
Lal22g0260 445 SUPERFAMILY PP2C-like 111 441 IPR036457 -
Lal22g0260 445 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 302 444 - -
Lal22g0260 445 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 29 274 - -
Lal22g0260 445 Pfam Protein phosphatase 2C 302 433 IPR001932 -
Lal22g0260 445 Pfam Protein phosphatase 2C 111 272 IPR001932 -
Lal22g0260 445 PANTHER ALPHABET, ISOFORM E-RELATED 29 274 - -
Lal22g0260 445 PANTHER ALPHABET, ISOFORM E-RELATED 302 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0260 Lal-Chr22 1645879 1648602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0260 85 445 PP2C-type Phosphatase Gene Family AT1G07430 55.325 2.75e-135 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0260 K14497 - gmx:100776356 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0260 22 1645879 1648602 Lal22g0260 22 1645879 1648602 ECH
Lal22g0260 22 1645879 1648602 Lal6g0270 6 1762209 1764336 LSH
Lal3g0552 3 4160564 4162318 Lal22g0260 22 1645879 1648602 PCT
Lal22g0260 22 1645879 1648602 Lal3g0552 3 4160564 4162318 PCT