Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0253 ATGTCTCCTTCTGATATCAACCACCTTTCTCATCCATGTATATATGGCGGTGGTAGGGATTATTCTTCTTCACACTCGGAGAGAAAGTTTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAAAGGTGGGTCCAATAGAGGAAGGGTTGGTCGTCATCATCTACCTGAGCCTTCAGAAGAAAACATGAGTTGGCGCGCTCCATCTAGAGCTTCGGATGATCGTGCTAGATCTCTGAAAGAGAAAGAGCTAGGCCATGCAATGGAACTTTCTCCAGGAGAAGATTTAAAGAGACCAAAAGCCCATCAAGGATATGATTGGGGGATAGATACTGATGAAGATTACTCAAAGGGACTAGATGATAGCTTGGACTCTTCTGCATACCCACCATATGCTCCTGCACCATATTATCCAAGGGATTATAGAATATGTGGCGGCTGCAACCAGGAGATACTGTATGGAAATTGTTTGGGCTGCATGGATTCTTATTTTCATCCGGATTGCTTTCGCTGTCACTCTTGTTGTTACCCGATTACTGAGCGCGAGATTCCTGTCAATTCTGCTGGTTTGATTGAGTATAGGTGCCACCCTTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCGGTAGTTGTGAAAGATTGGAGCCTCGGAATATAAAATACTACAGACTGGAAGACGGACGTAGTTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGATTGTCAGCCTCTTTACCATTCTATCAGAGATTATTATGAAGGAATGCAAATGAGAATAGATCAACAAGTTCCCATGCTTCTGGTTGAAAGAGAAGCACTTAATGAAGCTATTGTTGGGGAGAAGAATGGTTTCCATCACTTGCCAGAAACAAGGGGCTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTATACAAAGAAGGCCGAGAATCGGAGGCCACCGACTAATCGGGATAAGAACTCAACCTCACAAGCTGATTAGAAGAAGTGAAGTTACAGCCATTCTTGTTCTATATGGTCTTCCAAGGTTACTCACTGGTGCTATCCTTGCCCATGAATTGATGCATGCTTGGTTACGCCTTAAAGGTTACCGCAACCTTAATCCAGAAGTAGAAGAAGGGATTTGTCAGGTTCTTTCATACATGTGGCTTGAGTCAGAAGTAATGCCAAACTCTCAAAACATGCCATCAACAGCTTCTTCTTCTTCATCCTCTTCCACTTCTTCGAAGAAAGGTGTGAAGTCTCACGTTGAAAATAAACTTGGTGAATTTTTCATGAACCAGATTGTGAATGATTCTTCACCAGCTTATGGTGGTGGGTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTACGTTGTACTCTCGACCATATTCGTTTGACTGGTTTTTTCCCAATGTAG 1434 0.424 MSPSDINHLSHPCIYGGGRDYSSSHSERKFGFMKWLSKLFKGGSNRGRVGRHHLPEPSEENMSWRAPSRASDDRARSLKEKELGHAMELSPGEDLKRPKAHQGYDWGIDTDEDYSKGLDDSLDSSAYPPYAPAPYYPRDYRICGGCNQEILYGNCLGCMDSYFHPDCFRCHSCCYPITEREIPVNSAGLIEYRCHPFWSQKYCPSHEYDNTARCGSCERLEPRNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQVPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIQRRPRIGGHRLIGIRTQPHKLIRRSEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPNSQNMPSTASSSSSSSTSSKKGVKSHVENKLGEFFMNQIVNDSSPAYGGGFRAANEAVNKYGLRCTLDHIRLTGFFPM 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0253 477 Pfam LIM domain 143 187 IPR001781 -
Lal22g0253 477 CDD LIM_DA1 143 195 - -
Lal22g0253 477 Gene3D Cysteine Rich Protein 132 212 - -
Lal22g0253 477 MobiDBLite consensus disorder prediction 401 421 - -
Lal22g0253 477 PANTHER PROTEIN DA1-RELATED 2 21 182 IPR045218 -
Lal22g0253 477 PANTHER PROTEIN DA1-RELATED 2 182 477 IPR045218 -
Lal22g0253 477 MobiDBLite consensus disorder prediction 46 102 - -
Lal22g0253 477 MobiDBLite consensus disorder prediction 401 422 - -
Lal22g0253 477 Pfam Protein DA1 264 472 IPR022087 -
Lal22g0253 477 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 21 182 - -
Lal22g0253 477 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 182 477 - -
Lal22g0253 477 MobiDBLite consensus disorder prediction 66 102 - -
Lal22g0253 477 ProSiteProfiles LIM domain profile. 141 213 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0253 Lal-Chr22 1579117 1583369 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal22g0253 DA1-like 9.4e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0253 - - gmx:100784976 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0253 22 1579117 1583369 Lal22g0253 22 1579117 1583369 ECH
Lal22g0253 22 1579117 1583369 Lal6g0264 6 1715021 1719920 LSH