Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0243 ATGTTGGTCACTGAGGACAAGTCTATTGTTGTTAACATAGAAGATAATGGATGTGAAGGTTGTTGTTCTGATGAGGAACAAAGCTCCTCCCAGGATTCTGGTCCTGAGATTGTTGGAGTGTCTGAAAAAGAGAGAAGATCCTCTGTATCAGAGTGTTCAGTGGAGGTGGTGGATCTGGAAGGTACAGTATCTGATGTCAAGGTGCATCTAGCTAAGGTGGAGAGAGATTGTAGGATTTGTCATCTCAGCATGGATATGACCAACCATGAATCTGGGACCCCCATTGAGCTTGGATGTTCTTGCAAAGATGATTTAGCTGCAGCTCATAAACAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGTAACAAAACATGTGAAATATGCGGATCAATTGCACTCAACGTAGCTAGTGCAAATGAATCAGTTCAAATGAATGAACAGTGGAATGAAGGAAATGATGCCTCAATCATAATATCACCACCCCCACCAGCACCAACTGTGGAAAGTGGAAGTTTCTGGAAGGGACACCGTTTTCTTAATTTCTTGCTAGCATGTATGGTCTTTGCCTTTGTCATATCATGGCTTTTTCACTTCAATGTACCCTCATGA 609 0.4269 MLVTEDKSIVVNIEDNGCEGCCSDEEQSSSQDSGPEIVGVSEKERRSSVSECSVEVVDLEGTVSDVKVHLAKVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIALNVASANESVQMNEQWNEGNDASIIISPPPPAPTVESGSFWKGHRFLNFLLACMVFAFVISWLFHFNVPS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0243 202 SUPERFAMILY RING/U-box 74 130 - -
Lal22g0243 202 PANTHER ZINC FINGER, RING-CH-TYPE 24 202 - -
Lal22g0243 202 Pfam RING-variant domain 77 128 IPR011016 GO:0008270
Lal22g0243 202 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 24 202 - -
Lal22g0243 202 MobiDBLite consensus disorder prediction 22 45 - -
Lal22g0243 202 SMART ringv_2 76 129 IPR011016 GO:0008270
Lal22g0243 202 MobiDBLite consensus disorder prediction 22 36 - -
Lal22g0243 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 139 IPR013083 -
Lal22g0243 202 CDD RING_CH-C4HC3_MARCH 77 129 - -
Lal22g0243 202 ProSiteProfiles Zinc finger RING-CH-type profile. 69 135 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0243 Lal-Chr22 1515215 1517568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0243 8 202 C3H Transcription Factor Family AT5G05830 57.949 4.91e-70 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0243 - - gmx:100818979 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1638 9 18783854 18787370 Lal22g0243 22 1515215 1517568 ECH
Lal2g1884 2 21128523 21131437 Lal22g0243 22 1515215 1517568 ECH
Lal22g0243 22 1515215 1517568 Lal22g0243 22 1515215 1517568 ECH