Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0242 ATGGAATTGGAAACTTTGTATCCTCCTTGTTTTATGTCAAGTTCAAATTTGTTTGTGCAAGAGAACAACAACAACATAGAATGGACTAAAGAAGAGAATAAGCAGTTTGAGAGTGCAATTGCCATATATGATAAGGACACTCCAGACCGATGGCTTAAGGTGGCAGCCATGATCCCTGGGAAGACTGTGTTTGATGTGATCAATCAGTATAGGGAATTGGAAGAAGATGTGACTGAAATAGAAGCTGGCCGAGTTCCGATCCCGGGCTATATTGCCTCTTCTTTTACCTTTGAGCTGGTAAGCAACCAGAATTCTGATGGATGTAGAAAGAGGGCTGCAACTGTCAGGGGCTCTGATCAGGAGAAGAAGAAAGGGGTCCCCTGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTATGAAGTATGGTAAAGGGGACTGGAGAAATATATCGCGCAATTTTGTTGTCACAAAGACTCCAACCCAAGTTGCTAGTCATGCTCAGAAGTATTACATAAGACAGAAAGATTCTGGAGTTAAAGATAAAAGGAGGCCTAGTATCCATGATATAACCACTGTGAATCTTAGAGAAACTGTGACTTTAGATTACAATAATCCACTTCTATTCAACGAGTCTCCCATGCTTGTTGAACCACAGCAGAAGCTGAGTACTAGCATCTCAAAAGTACAATTGGATTGGATTAATCACTATAATGATGGTTCACTCATGGTTTTCAACCCAAATTGTGATGACTTATTGAAAGTGAAAGGGCAGGATCTCAATGACTCTGCATTCCATGAGGCTTATGCCAAGCTACAAATTCCAAGTTTCAGAATGGCTTCTAGAGACTTCAATAAGGAATCTGTTTTCGGTATCCATGCACTTTCATGCGAACTATGA 903 0.4097 MELETLYPPCFMSSSNLFVQENNNNIEWTKEENKQFESAIAIYDKDTPDRWLKVAAMIPGKTVFDVINQYRELEEDVTEIEAGRVPIPGYIASSFTFELVSNQNSDGCRKRAATVRGSDQEKKKGVPWTEEEHRRFLMGLMKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKDSGVKDKRRPSIHDITTVNLRETVTLDYNNPLLFNESPMLVEPQQKLSTSISKVQLDWINHYNDGSLMVFNPNCDDLLKVKGQDLNDSAFHEAYAKLQIPSFRMASRDFNKESVFGIHALSCEL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0242 300 Pfam Myb-like DNA-binding domain 127 171 IPR001005 -
Lal22g0242 300 Pfam Myb-like DNA-binding domain 27 72 IPR001005 -
Lal22g0242 300 SUPERFAMILY Homeodomain-like 27 81 IPR009057 -
Lal22g0242 300 Gene3D - 126 177 - -
Lal22g0242 300 SMART sant 24 76 IPR001005 -
Lal22g0242 300 SMART sant 124 174 IPR001005 -
Lal22g0242 300 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 267 IPR043363 -
Lal22g0242 300 Gene3D - 20 87 - -
Lal22g0242 300 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 267 - -
Lal22g0242 300 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 123 175 IPR006447 GO:0003677
Lal22g0242 300 ProSiteProfiles Myb-like domain profile. 120 172 IPR001005 -
Lal22g0242 300 ProSiteProfiles SANT domain profile. 128 176 IPR017884 -
Lal22g0242 300 CDD SANT 27 73 IPR001005 -
Lal22g0242 300 ProSiteProfiles Myb-like domain profile. 20 74 IPR001005 -
Lal22g0242 300 CDD SANT 127 171 IPR001005 -
Lal22g0242 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 176 IPR017930 -
Lal22g0242 300 ProSiteProfiles SANT domain profile. 27 78 IPR017884 -
Lal22g0242 300 SUPERFAMILY Homeodomain-like 122 177 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0242 Lal-Chr22 1511667 1513969 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal22g0242 Myb_DNA-binding 3.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0242 - - gmx:778039 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2221 1 24169617 24171443 Lal22g0242 22 1511667 1513969 ECH
Lal2g1901 2 21263653 21266258 Lal22g0242 22 1511667 1513969 ECH
Lal22g0370 22 2383737 2386250 Lal22g0242 22 1511667 1513969 ECH
Lal5g0915 5 10961450 10963494 Lal22g0242 22 1511667 1513969 ECH
Lal22g0242 22 1511667 1513969 Lal22g0242 22 1511667 1513969 ECH
Lal3g0575 3 4350942 4353198 Lal22g0242 22 1511667 1513969 PCT
Lal22g0242 22 1511667 1513969 Lal3g0575 3 4350942 4353198 PCT