Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0239 ATGCCTTCTTGTGCAACAACAACCTTGGTCTCAAAATTCACTGTCTTCCCAGACCAAAAATCCACCCTTGGAGACCTTAAACTCTCCGTTTCAGACCTTCCCATGCTTTCTTGCCACTACATCCAAAAAGGTTGTCTCTTCACTAAACCTTCTATTCCAACCCATATTCTCATCCCATACCTCAAATCAGCACTCTCTCGCACTCTTTCCCTTTTTCCTCCACTTGCTGGTCGTTTAACCACCGACTCAGACGGTTACGTTTACATCACTTGTAACGATGCTGGCGTTGATTTCCTTCACGCCAATGCTACCTCTTATAAAATTTCTGACCTTTTGTCCCCACTCGATATATCTCCATGTTTCAAAGAATTCTTCACCTTCGATAGCAAGGTTAGCTATAGTGGTCATTCCTCTCCCATAGTGGCTGTTCAGGTTACTGAACTCGCGGACGGTGTTTTCATTGGCTGCGCCGCTAATCATGCTGTTACTGATGGAACTTCTTTCTGGAACTTCTTTAATATATTTGCTCAATTATGCAGAGGAGGTAGTAAGGGGCTTCATATGGTTCCTGATTTCACCCGTGACTCCGTTCTGATTTCTAACTGTGTTCTTCGCTTGCCACAAGGTGGTCCCAAAGTAACGTTCGATGCTGATGCGCCATTACGTGAACGAATCTTCAGTTTCAGCCGTGAATCCATTCAGGAACTGAAATCCAGAGTCAATAACAGAAAATGGACGGAGGATAAAGCTGTTGAGTTGATGATGAAAAACAGCAACGATTATCACCAGAAAGAGAACGGCAAGGTTGCTACGATTTTCGAGAACTGGTTCAAAACTGAAGTTAATTCTAAACCGCAACTCGCGGCTGAAACGGTTGAGATTTCGTCGTTTCAATCTCTTTGCGCTTTGCTGTGGCGTGCGGTGACACGCGCGAGGAAGTTGCAGGAATCGAAAATGACGACGTTTAGAATGGCGGTTAACTGTCGCCATCGGATGAAACCAAAATTGGAAAGTTACTACTTCGGTAACGCGATTCAGAGCGTGCCAACTTATGCTTCTGCGGGAGAGGTGTTGTCTATGGATCTACGGTGGTGCGCGGAGCAGCTGAACAAAAACGTGAGGGAACACGATGATTCTATGGTGAGGAAGTTCATAGAGGATTGGGAGAATAATCCAAGGGTATTCCCATTGGGTAACCCTGACGGTGCATCAATCACCATGGGTTCCTCTCCAAGATTCCCAATGTATGATAACGATTTCGGTTGGGGAAGACCTTTAGCTGTCATGAGTGGAAAGGCAAATAAATTTGACGGTAAGATCTCGGCTTTTCCTGGGAGAGAAGGAACCGGAACCGTTGATTTGGAGGTTGTTTTGGCGCCTGAAACAATGGCGGGGCTTGAGTGTGATGCTGAGTTCATGCTTTACGCTACGACTCAATTATAA 1443 0.4546 MPSCATTTLVSKFTVFPDQKSTLGDLKLSVSDLPMLSCHYIQKGCLFTKPSIPTHILIPYLKSALSRTLSLFPPLAGRLTTDSDGYVYITCNDAGVDFLHANATSYKISDLLSPLDISPCFKEFFTFDSKVSYSGHSSPIVAVQVTELADGVFIGCAANHAVTDGTSFWNFFNIFAQLCRGGSKGLHMVPDFTRDSVLISNCVLRLPQGGPKVTFDADAPLRERIFSFSRESIQELKSRVNNRKWTEDKAVELMMKNSNDYHQKENGKVATIFENWFKTEVNSKPQLAAETVEISSFQSLCALLWRAVTRARKLQESKMTTFRMAVNCRHRMKPKLESYYFGNAIQSVPTYASAGEVLSMDLRWCAEQLNKNVREHDDSMVRKFIEDWENNPRVFPLGNPDGASITMGSSPRFPMYDNDFGWGRPLAVMSGKANKFDGKISAFPGREGTGTVDLEVVLAPETMAGLECDAEFMLYATTQL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0239 480 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 474 - -
Lal22g0239 480 Pfam Transferase family 8 473 - -
Lal22g0239 480 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 7 474 - -
Lal22g0239 480 Gene3D - 7 203 IPR023213 -
Lal22g0239 480 Gene3D - 220 472 IPR023213 -
Lal22g0239 480 SUPERFAMILY CoA-dependent acyltransferases 40 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0239 Lal-Chr22 1479815 1481257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0239 47 467 Monolignol Biosynthesis Gene Families AT5G48930 28.375 9.50e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0239 - - vun:114195488 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0239 22 1479815 1481257 Lal5g1136 5 14090211 14091539 ECH
Lal22g0239 22 1479815 1481257 Lal22g0239 22 1479815 1481257 ECH
Lal18g1360 18 15974585 15976030 Lal22g0239 22 1479815 1481257 LSH
Lal5g1136 5 14090211 14091539 Lal22g0239 22 1479815 1481257 PCT
Lal22g0239 22 1479815 1481257 Lal3g0580 3 4381622 4383001 PCT
Lal22g0239 22 1479815 1481257 Lal18g1360 18 15974585 15976030 PCT