Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0233 ATGGCTTCCACTTACAGAGACCGCACCTCGGAGTTTCATTCATTGTCTCTGACTCTGAAGAAGATTGTTGGATCCACACCTACATCCTCTAATCAAAATGCTCCTTCTATATCCCTTTCTCAACAATCCGATTTCAACCGAAAAGCTTCTCGAATCGGTTTTGGCATCTACGATACCTCCCAGAAAATCGCAAGGCTCGCTAAACTGGCGAAGAAATCCTCCATGTTCAATGACCCCATAATGGAAATTCAGGAATTGACAATTCTCATTAAGAATGACATCACCGCGTTGGACTCGGCTCTTAAGGATTTGCAAAACATTCAGAATATTGAGATAGTTGATGGGAATTTCTCTCAGGATAGGATTGTTCATTCTAATGCTGTTTGTGATGACTTGAAGGCCAAACTCATGGGTGCTACCAAACAACTTCAAGATGTTTTAACTACTAGGACAGAGAATATCAAGGCTCATGAGAATAGGAAGCAGATATTTTCCAAGAATGCGGCATCGAGGGATAACCCTTTTCAGCATCAACCAAAGCCAGTCACTGAGCCACCCCCTTGGTCAAATTCATCAAATGCATCTGAGAGTTTACAACAAACATCAACGTTACCATCGAATGGAGTTCCAGCCAGTAATCAACTAAGACGAAGGTTAGCGGTAGACAACACTCCATCCCAGCAAATGGAAATGTCTATGGTGCAGCAGGTTGTTCCTCTGCACGAAAACCATGCTCAAAGTCGGGCAAGTGCTCTACACAACGTGGAATCTACTATCACAGAACTCAGTGGGATCTTCACGAATTTGGCTACAATGGTTGCCCATCAAGGGGAACTAGCTATCAGGATTGATGACAACATGGATGAATCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCAAATATCATCAAATAGGTGGCTTCTAATCAAGATATTTGCCATTCTCATACTTTTTCTTATGATCTTCTTATTCTTCGTGGCCTAA 1005 0.4219 MASTYRDRTSEFHSLSLTLKKIVGSTPTSSNQNAPSISLSQQSDFNRKASRIGFGIYDTSQKIARLAKLAKKSSMFNDPIMEIQELTILIKNDITALDSALKDLQNIQNIEIVDGNFSQDRIVHSNAVCDDLKAKLMGATKQLQDVLTTRTENIKAHENRKQIFSKNAASRDNPFQHQPKPVTEPPPWSNSSNASESLQQTSTLPSNGVPASNQLRRRLAVDNTPSQQMEMSMVQQVVPLHENHAQSRASALHNVESTITELSGIFTNLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNQISSNRWLLIKIFAILILFLMIFLFFVA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0233 334 MobiDBLite consensus disorder prediction 187 213 - -
Lal22g0233 334 Pfam SNARE domain 279 330 IPR000727 -
Lal22g0233 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 242 304 IPR000727 -
Lal22g0233 334 PANTHER SYNTAXIN-31 4 333 - -
Lal22g0233 334 SUPERFAMILY t-snare proteins 43 297 IPR010989 GO:0016020|GO:0016192
Lal22g0233 334 MobiDBLite consensus disorder prediction 157 213 - -
Lal22g0233 334 CDD SNARE_syntaxin5 245 329 - -
Lal22g0233 334 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 20 IPR021538 -
Lal22g0233 334 Gene3D - 39 297 - -
Lal22g0233 334 PANTHER SYNTAXIN 4 333 IPR045242 -
Lal22g0233 334 SMART tSNARE_6 237 304 IPR000727 -
Lal22g0233 334 ProSitePatterns Syntaxin / epimorphin family signature. 248 287 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0233 Lal-Chr22 1448702 1452839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0233 1 334 SNARE and Associated Proteins AT5G05760 66.667 8.23e-147 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0233 K08490 - gmx:100777383 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0233 22 1448702 1452839 Lal22g0233 22 1448702 1452839 ECH