Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0222 ATGATGACGACCAAACCACCCTCCTCCGTCGTCACCCTCACCGTCGCCGCCGTCATCATTTTCTCTTCACTATTGCCATTTTGTCATGCTCTCGGCTCCGGCACCACTCTTGCCGTCACCGACGCATCCGCCACCGTGTGCGGCATTGTGGCGTCACACCCAATCCAACGCATTGAATGCTACCGCCGCGGCCACGTCATCGCCGTCGCCCCGAAGGTTTCATTTTCTGTCATCTCCGGCGGAAGAAACTACTTCTGCGGCCTCAGGTCCGGTAACTACAGCTTACTCTGCTGGGACACTGTCTCTTCCAACGTTACCTTTGAAAGGAGAAGACTTTACAACAATGATACTGTTCTATTCGAGAATCTTGCCGTTGGTGACACCCAAGTTTGCGCTACAGTTGTTGGTGCTGGAATGGCGTCGTGTTGGAGAACCAATAGTGCGTTTGAATTGCCATCTGAGTATGATCAATTCGCTTCTATTTCATCTGGGTCGGGTTTTTCTTGCGGAATTGTGAAGAACGGTTCGTTGGTTCGGTGTTGGGGTAATGGGTCTATTGCTAGAAAGATAGAGAGTGGATTCGGGAACATGTCTATGCTGAGTATTGTAGCTGGCGAATCACATGTTTGTGGGTTGGATTCAAATGGGTTTTTGGTATGTAGAGGGAGTAATAGTTTTGGTCAAATTGATGTTCCGAAAGGAGGGTCCTTTGATTATTCTGGGTTAGCACTTGGAGCTGAACATAGTTGTGCTATTAGGAGATTGAATGGTTCTGTTGTTTGTTGGGGTGGTAGGGGTTTGTTCTCTGTTAATGTTACTCAAGGTGTTTCTTTTGAGACCATTGTTTCTGGCTCCAATTTTACTTGTGGATTGACAACAAGGAATTTTTCTGTTATGTGTTGGGGTCCTGGTTGGTCTAATAATGATGGTCATAGTTCTAGTCCTAGGTTTGAGCTTCCCTTGTCTCCTATTCTTCCAGGGCCTTGTGTTCAATCTTCTTGTAGTAAATGTGGTGTATATCCTGCTTCTCAAATTTTGTGTTCCGGAAATGGTAACATTTGCAAGCCACAGCCTTGTTCTCCTCAAATGCCAGTTCTACTGGCACCACCACCGCCCTTACCACCATTGGCGCAGCCACAATCCGTGCCTCCTTCCCCTTCGTTGTCGAAGGGATTGACAACAGGCTTATTGGTATTTGCCATTGTTGGATCAGTAGGAGCTGCTGCTGGCATTTGCACCATAATTTATTGCTTGTGGGCTGGTGTTTGTTTGGGGAAGAAGAAAGTCCATAATTCTGTGCAGCCAAGAATTACTAGAGGTGGCAGTTCAAATGGTGATGATAATAGCCCGCCTTCAAGATCATCCACCATTATCCGTCAGGGCTCAAGAATAATACGGCGTCAGAGGAGCGGAACATCGTCAACAAAACATACAGACAGGGCGGAGGAGTTCAACCTGGTTGAGCTTGCTTCGGCTACCAACAATTTCTCACTTGAGAACAAGATTGGTGCCGGAAGCTATGGTGTTGTTTATAGAGGCAAACTCACCGATGGTCGCGAGGTGGCGATCAAGAGGGGTGACACTGGTACCAAGATGAAGAAGTTTCAAGAGAAAGAGAGTGCATTTGAGTCAGAATTGGCGTTCATGTCCCGTCTACACCACAAGCATTTGGTTAGGCTAATTGGGTACTGTGAAGAGAAAGATGAAAGGCTTTTGGTGTATGAATATATGACGAATGGGGCATTATATGATCATTTACATGACAAAAACAATGTAGACAAGAGTAGTAGTCTCTTGAATTCTTGGAGAATGAGGATCAAAATCGCGCTGGATGCTTCACGAGGAATCGAATATCTTCATAATTATGCAGTTCCGTCTATAATTCACAGAGATATCAAGTCCTCTAATATTCTGATCGACGCAAATTGGACCGCAAGAGTATCTGATTTTGGATTGTCATTGATGAGTCCAGATTCTGGCCATGATTACCAGCCTACGAAGGCAGCTGGAACGGTTGGATACATCGATCCTGAGTATTATGGTCTAAATGTTTTGACAGCAAAGAGTGATGTCTATGGGCTTGGAGTGGTACTACTAGAACTCTTAACAGGAAAGAGAGCTATATTCAAGGATGGTGAGAATGGAGGCACCCCTGTGAGTGTTGTAAGCTATGCTGTGCCTGCAATCATGGGAGGAGAACTGTCCAAGATTCTGGACCCGAGGGTTGAACCGCCAGAGTTGAATGAAACAGAAGCGGTGGAGCTGGTGGCCTATACTGCTATGCATTGTGTAAATTTGGAAGGGAAAGATAGACCAACAATGGCTGACATTGTGGCCAATTTGGAGCGTGCTTTGACTTTGTGTGATACTAGTCATGGCAGCATTTCCAGCGGTACAATCTCTATTGCATCAGACTGA 2418 0.4595 MMTTKPPSSVVTLTVAAVIIFSSLLPFCHALGSGTTLAVTDASATVCGIVASHPIQRIECYRRGHVIAVAPKVSFSVISGGRNYFCGLRSGNYSLLCWDTVSSNVTFERRRLYNNDTVLFENLAVGDTQVCATVVGAGMASCWRTNSAFELPSEYDQFASISSGSGFSCGIVKNGSLVRCWGNGSIARKIESGFGNMSMLSIVAGESHVCGLDSNGFLVCRGSNSFGQIDVPKGGSFDYSGLALGAEHSCAIRRLNGSVVCWGGRGLFSVNVTQGVSFETIVSGSNFTCGLTTRNFSVMCWGPGWSNNDGHSSSPRFELPLSPILPGPCVQSSCSKCGVYPASQILCSGNGNICKPQPCSPQMPVLLAPPPPLPPLAQPQSVPPSPSLSKGLTTGLLVFAIVGSVGAAAGICTIIYCLWAGVCLGKKKVHNSVQPRITRGGSSNGDDNSPPSRSSTIIRQGSRIIRRQRSGTSSTKHTDRAEEFNLVELASATNNFSLENKIGAGSYGVVYRGKLTDGREVAIKRGDTGTKMKKFQEKESAFESELAFMSRLHHKHLVRLIGYCEEKDERLLVYEYMTNGALYDHLHDKNNVDKSSSLLNSWRMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDANWTARVSDFGLSLMSPDSGHDYQPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDGENGGTPVSVVSYAVPAIMGGELSKILDPRVEPPELNETEAVELVAYTAMHCVNLEGKDRPTMADIVANLERALTLCDTSHGSISSGTISIASD 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0222 805 Gene3D Phosphorylase Kinase; domain 1 458 576 - -
Lal22g0222 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Lal22g0222 805 Gene3D Transferase(Phosphotransferase) domain 1 577 794 - -
Lal22g0222 805 ProSiteProfiles Protein kinase domain profile. 496 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0222 805 Pfam Regulator of chromosome condensation (RCC1) repeat 201 228 - -
Lal22g0222 805 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 8 803 - -
Lal22g0222 805 SUPERFAMILY Protein kinase-like (PK-like) 475 781 IPR011009 -
Lal22g0222 805 SMART serkin_6 496 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0222 805 Gene3D - 190 365 IPR009091 -
Lal22g0222 805 Gene3D - 28 189 IPR009091 -
Lal22g0222 805 MobiDBLite consensus disorder prediction 435 471 - -
Lal22g0222 805 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524
Lal22g0222 805 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 8 803 IPR044815 GO:0004674
Lal22g0222 805 MobiDBLite consensus disorder prediction 435 478 - -
Lal22g0222 805 SUPERFAMILY RCC1/BLIP-II 30 264 IPR009091 -
Lal22g0222 805 Pfam Protein kinase domain 497 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0222 Lal-Chr22 1370747 1373164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0222 11 805 Receptor kinase-like Gene Family AT3G55950 60.934 0.0 879
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lal22g0222 Pkinase 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0222 - - gmx:100798905 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0222 22 1370747 1373164 Lal17g1573 17 17140840 17143260 ECH
Lal22g0222 22 1370747 1373164 Lal22g0222 22 1370747 1373164 ECH
Lal18g1373 18 16062784 16065183 Lal22g0222 22 1370747 1373164 LSH
Lal22g0222 22 1370747 1373164 Lal6g0236 6 1562697 1565090 LSH