Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0219 ATGTGCAGCGGTTCAAAAAGTAAACTTTCTACCTCAAATCAAGTCATGGAAAGTGAGTTTCAGAAGATTTTGCTTGAATTGTCTGCGTTTGATGATGTTGAAGCTTTCAAAAGAGAAGTGGAAGAGAAAGGGTTGGATGTTAATGAGGCAGTATTTTGGTATGGTAGAAGAATTGGATCAAAGAAGATGGGGTATGAAAAGAGGACCCCCCTCATGATTGCTTCTTTGTTTGGAAGCACTAAGGTGGCTAAGTATATTATTGAGATTGGCATGGTTGATGTGAATAAGGCCTGTGGTTCTGATGGGGCCACTGCTCTCCATTGTGCTGTTGCCGGGGGTTCTGAATCCTCACTTGAGATTGTCAAGCTCTTGCTTGATGCAGGGGCAGATGCTGATTGTCTCGATGCTATTGGCAACAAGCCTGTTTCTCTGATCGCTCCTGCTTTTATTCCTTTGTCCTATTCGCGAAGGAAGGCACTGGAGTTTTTTCTCGGAGGTGGGCAAGGTAATGAACACTTCTATGAGATTGAGCAACTGCCTGAGAAAAAAGAAGGATCAGATAAGAAAGAGTATCCTGTTGATATATCGTTGCCTGACATAAACAACGGTGTGTATGGAACAGATGACTTTAGGATGTATAGCTTTAAGGTGAAGCCGTGCTCGAGGGCTTACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCACGGAAATACCCTTATAGCTGTGTTCCCTGCCCAGAGTTTCGCAAGGGGACCTGCCAGAAGGGTGATTCCTGTGAGTATGCACATGGTGTTTTCGAGTCTTGGCTACATCCTGCTCAATACCGGACACGGCTTTGCAAGGATGAGACTGGCTGCAATAGAAAAGTCTGCTTCTTCGCTCACAAACCCGAAGAGTTACGTCCTGTATATGCCTCCACTGGTTCAGCTATGCCTTCGCCAAAATCTTATTCAGCTAGTGCATTTGACATGACATCAATGAGTCCGTTGTCTCTTAGTTCCTCATTGCCTATGTCAACCGTTTCAACACCACCGATGTCTCCTTTGGTAGCTTCTTCATCTCCCAAAAGTGGAAACTTGTGGCAGAACAAAATCAACTTCACCCCACCATCATTGCAGCTCCCGAGTAGCAGGCTTAAGGCTGCTTTGAGTGCCAGGGATCTAAATCTTGAGATGGAACTGCTCGGTTTAGAAAGTCCTAGCCACGCTCGTCAACAGCAGCAGCAACAATTGATAGAAGATATTGCCAGAATCTCTTCCCCATCTTTCCGAAGCCGGGTGGGTGATTTGAATCCTACTAACCTAGACGAACTGTTAGCATCTGCAGATGCTTCTGTATTATCTCAGTTACATGGACTTTCTGTACAACCTTCAACACCTACACAGATGCAATCTCAAAACGCGCTTCAGATGCGCCAGAACATAAACCACCTTCGTGCAAGCTATCCATCCAACAACATGCCTTCCTCTCCCGTGTATAAATCCTCATCATATGGGTTCGACTCATCGGCTGCTGTGGCTGCAGCGATGATGAATTCCAGGTCTGCTTCCTTCGCAAAGAGAAGCCAAAGTTTTATTGATCGTGGTGCTGCAACACACCATATCGGACTGTCATCGCCTTCCAACCCCGCCTGTAGGGTGTCTTCTACCCTTTCCGAATGGGGTTCCCCGACTGGGAAGCTGGAGTGGGGCTTAAACGGAGATGAGCTGAACAAGCTGAGGAAATCTGCTTCATTTGGGTACAGAAACAATGGGGCATCATCCCCCATGGCACAACCAGAACATGTTGAGCCAGACGTTTCATGGGTTCATTCGATGGTTAGAGAAGAGAGGACTGAAAGATTTGGTGTTGAGAAGCAGCAGCAGCAGCAGCAGCAGCGTTATGATCTCAGTAAAGAGATGCTTCCACCATGGCTGGAGCAGCTGTACATAGAGCAGCAGGAGCAAATGGTAGCATAA 1989 0.4681 MCSGSKSKLSTSNQVMESEFQKILLELSAFDDVEAFKREVEEKGLDVNEAVFWYGRRIGSKKMGYEKRTPLMIASLFGSTKVAKYIIEIGMVDVNKACGSDGATALHCAVAGGSESSLEIVKLLLDAGADADCLDAIGNKPVSLIAPAFIPLSYSRRKALEFFLGGGQGNEHFYEIEQLPEKKEGSDKKEYPVDISLPDINNGVYGTDDFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASAFDMTSMSPLSLSSSLPMSTVSTPPMSPLVASSSPKSGNLWQNKINFTPPSLQLPSSRLKAALSARDLNLEMELLGLESPSHARQQQQQQLIEDIARISSPSFRSRVGDLNPTNLDELLASADASVLSQLHGLSVQPSTPTQMQSQNALQMRQNINHLRASYPSNNMPSSPVYKSSSYGFDSSAAVAAAMMNSRSASFAKRSQSFIDRGAATHHIGLSSPSNPACRVSSTLSEWGSPTGKLEWGLNGDELNKLRKSASFGYRNNGASSPMAQPEHVEPDVSWVHSMVREERTERFGVEKQQQQQQQRYDLSKEMLPPWLEQLYIEQQEQMVA 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0219 662 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 254 274 IPR000571 GO:0046872
Lal22g0219 662 SMART c3hfinal6 284 307 IPR000571 GO:0046872
Lal22g0219 662 SMART c3hfinal6 249 275 IPR000571 GO:0046872
Lal22g0219 662 Pfam Ankyrin repeats (3 copies) 62 132 IPR002110 GO:0005515
Lal22g0219 662 ProSiteProfiles Ankyrin repeat region circular profile. 101 135 - -
Lal22g0219 662 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 18 660 - -
Lal22g0219 662 SMART ANK_2a 101 133 IPR002110 GO:0005515
Lal22g0219 662 SMART ANK_2a 66 96 IPR002110 GO:0005515
Lal22g0219 662 Gene3D - 17 149 IPR036770 -
Lal22g0219 662 PANTHER UNKEMPT FAMILY MEMBER 18 660 IPR045234 -
Lal22g0219 662 SUPERFAMILY Ankyrin repeat 24 143 IPR036770 -
Lal22g0219 662 ProSiteProfiles Zinc finger C3H1-type profile. 249 276 IPR000571 GO:0046872
Lal22g0219 662 ProSiteProfiles Ankyrin repeat profile. 101 136 IPR002110 GO:0005515
Lal22g0219 662 Gene3D - 251 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0219 Lal-Chr22 1342800 1344788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0219 24 656 C2H2 Transcription Factor Family AT5G12850 39.199 1.77e-137 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal22g0219 Ank_2 2.5e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0219 - - gmx:100783376 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0219 22 1342800 1344788 Lal22g0219 22 1342800 1344788 ECH
Lal18g1377 18 16093090 16095084 Lal22g0219 22 1342800 1344788 LSH