Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0217 ATGATGAACTCCAACGGTGGAGATCGCGTGAAGGGTTCATGGACTCCGCAAGAGGATGAAACGCTGTTGAGACTTGTGGCGGAACATGGCCCACGTAACTGGACGGTGATCAGCGCTGGGATCCCAGGGCGATCCAGCAAATCGTGTCGTCTACGGTGGTGTAATCAGCTGAGTCCCGACGTTCAGCACCGTTCATTTACCCCGGCGGAGGACACTATCATCATCAACGCTCACGCACTCCACGGTAACAAGTGGGCCACGATTTCAAGACTCTTACCAGGAAGAACTGATAATGCTATAAAGAATCATTGGAATTCAACCCTCCGCCGCCGTGGTTTGGCGCAAGGATACTCTTCCTCCGAGTCGGATACCGTGGTGAACAAGAAGCGCACCACGAATGACTTCATCCTCGGTAGTTATCCATTCAAGAGGCCTTATAGGGAGAACGGTTCCACTGAGAAGAACAATGGTTTCGGTTCAGCGGAGAATACTAATAGTATTCCTGTGACGACGTCGTTGAGTCTGTTGCCGCCGGGAGCGAAGAAGAGTGAAGAGGAAGAGGAAGAATGTGAGATGGTGAACCGTCAAACTCGCTTGAGGGAGATGATTCGGCGCATGATAGCGGATGAGGTTAGGAGTTACATGGATGAATTGCGCCTTCGTCATATTCGTACTAGTTTAAAACTTGATACTAACTAA 699 0.5021 MMNSNGGDRVKGSWTPQEDETLLRLVAEHGPRNWTVISAGIPGRSSKSCRLRWCNQLSPDVQHRSFTPAEDTIIINAHALHGNKWATISRLLPGRTDNAIKNHWNSTLRRRGLAQGYSSSESDTVVNKKRTTNDFILGSYPFKRPYRENGSTEKNNGFGSAENTNSIPVTTSLSLLPPGAKKSEEEEEECEMVNRQTRLREMIRRMIADEVRSYMDELRLRHIRTSLKLDTN 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0217 232 Gene3D - 10 62 - -
Lal22g0217 232 CDD SANT 65 108 IPR001005 -
Lal22g0217 232 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Lal22g0217 232 Pfam Myb-like DNA-binding domain 65 107 IPR001005 -
Lal22g0217 232 Gene3D - 65 111 - -
Lal22g0217 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Lal22g0217 232 PANTHER MYB PROTEIN-RELATED 8 178 - -
Lal22g0217 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 61 IPR017930 -
Lal22g0217 232 MobiDBLite consensus disorder prediction 151 177 - -
Lal22g0217 232 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Lal22g0217 232 SMART sant 62 110 IPR001005 -
Lal22g0217 232 SMART sant 10 59 IPR001005 -
Lal22g0217 232 SUPERFAMILY Homeodomain-like 9 104 IPR009057 -
Lal22g0217 232 CDD SANT 13 55 IPR001005 -
Lal22g0217 232 MobiDBLite consensus disorder prediction 146 187 - -
Lal22g0217 232 PANTHER OS01G0850400 PROTEIN 8 178 - -
Lal22g0217 232 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0217 Lal-Chr22 1335022 1336095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0217 8 178 MYB Transcription Factor Family AT5G67300 50.575 5.08e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal22g0217 Myb_DNA-binding 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0217 - - gmx:102661292 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0217 22 1335022 1336095 Lal22g0217 22 1335022 1336095 ECH
Lal22g0217 22 1335022 1336095 Lal6g0233 6 1530458 1531219 LSH