LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal22g0215	ATGAGAGGATATGAACCTCGTTCAAGTTCATCTTGTGCAGCCTGCAAGTTCTTGAAGAGAAGATGCATACCAAATTGTATATTTGCACCTTACTTTCGCTCAGATGAGTGCAAGAAATTTGCCAAGGTCCACAAAGTGTTTGGAGCTAGCAATGTCAGCAAGATCCTTATTGAAGTGCCAGAAGAGCATAGAGAGGACACTGTGAATTCACTGGCTTATGAAGCAGAAGCAAGGCTTAAGGACCCTGTTTATGGATGCATTGGTGCTATTGCTTTGTTGCAAAGGAAAATGGTGGAACTTCAACATGACCTTGCAATTGCTAAGGATCGTCTTGCTCTATATGCTGCTGCAACTACTACTACTACAGCTTCAAATGATTTCTTCAATAATCATGTTAGTTTGCCGCCATTCCCTGATTTCTATACTTGCAGTGATTTCAATGACAGCTTCAGCAACAGCTCTCCATCTCAATCATTGAGCCGACATGAAACAACTGTGGATGATTTCATTCAAATTCCTTATATATTTTAA	531	0.403	MRGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEHREDTVNSLAYEAEARLKDPVYGCIGAIALLQRKMVELQHDLAIAKDRLALYAAATTTTTASNDFFNNHVSLPPFPDFYTCSDFNDSFSNSSPSQSLSRHETTVDDFIQIPYIF	176

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal22g0215	176	ProSiteProfiles	LOB domain profile.	10	111	IPR004883	-
	Lal22g0215	176	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	1	169	-	-
	Lal22g0215	176	Coils	Coil	90	110	-	-
	Lal22g0215	176	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 21	1	169	-	-
	Lal22g0215	176	Pfam	Lateral organ boundaries (LOB) domain	11	108	IPR004883	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal22g0215	Lal-Chr22	1325730	1326260	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal22g0215	1	146	AS2 family	AT3G11090	65.753	6.09e-65	195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LOB	Lal22g0215		LOB	1.6e-37	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal22g0215	-		-	gmx:100777635	276.944

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal22g0215	22	1325730	1326260	Lal22g0215	22	1325730	1326260	ECH
	Lal22g0215	22	1325730	1326260	Lal6g0231	6	1515430	1515972	LSH