Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0214 ATGGCTAGAGGATTGAAGAAACATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCCTTTGCTCCCAAGCCATCATCTGGACCACATAAGTCCAGGGAATGTCTCCCACTCATTCTCATATTGCGAAACAGACTGAAGTATGCCCTGACATACCGTGAAGTCATTGCTATTCTGATGCAGCGCCACATCCTTGTTGATGGCAAAGTCAGGACTGACAAGACATATCCTTCTGGTTTCATGGATGTTGTATCTATTCCTAAAACCAATGAGAATTTCCGTCTGCTTTATGACACCAAAGGTCGTTTCCGTCTCCACTCTGTTAGGGACGATGAGGCAAAGTTTAAGCTTTCTAAGGTTCGATCTGTGCGGTTTGGGGATAAGGGTATCCCATACCTGAACACCTATGATGGTCGCACTATCCGCTACCCCGACCCAGTCATCAAGGCAAACGACACCATCAAATTGGATTTGGAGGAGAACAAGATTGTTGACTTCATTAAGTTTGATGTTGGTAATGTTGTGATGGTTACTGGTGGAAGGAATAGGGGACGTGTTGGGGTGATCAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACAGTCCACATCCAGGATTCCACAGGACATGAATTTGCAACTCGTATGGGCAATGTGTTCACTATTGGCAAAGGGACTAAGCCTTGGATCTCTCTTCCTAAGGGTAAGGGTATTAAGCTATCAATCATTGAGGAAGCTAGGAAAAGGATTGCTGCTCAACAACCAACTGCTGCTTAA 795 0.4528 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHILVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLSKVRSVRFGDKGIPYLNTYDGRTIRYPDPVIKANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETVHIQDSTGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAAQQPTAA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0214 264 Hamap 30S ribosomal protein S4e [rps4e]. 7 238 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal22g0214 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 220 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal22g0214 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 221 264 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal22g0214 264 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Lal22g0214 264 Gene3D - 175 245 IPR014722 -
Lal22g0214 264 PANTHER 40S RIBOSOMAL PROTEIN S4 221 264 - -
Lal22g0214 264 PANTHER 40S RIBOSOMAL PROTEIN S4 2 220 - -
Lal22g0214 264 CDD KOW_RPS4 175 229 IPR041982 -
Lal22g0214 264 Pfam KOW motif 177 210 IPR005824 -
Lal22g0214 264 SMART kow_9 174 201 IPR005824 -
Lal22g0214 264 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Lal22g0214 264 Pfam S4 domain 47 90 IPR002942 GO:0003723
Lal22g0214 264 Gene3D - 122 172 IPR038237 -
Lal22g0214 264 PIRSF RPS4a_RPS4e 1 241 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal22g0214 264 Pfam 40S ribosomal protein S4 C-terminus 212 258 IPR032277 -
Lal22g0214 264 SMART s4_6 42 106 IPR002942 GO:0003723
Lal22g0214 264 CDD S4 51 112 - -
Lal22g0214 264 Pfam Ribosomal family S4e 95 169 IPR013845 -
Lal22g0214 264 Gene3D - 1 117 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0214 Lal-Chr22 1318899 1321025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0214 1 260 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.154 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0214 K02987 - gmx:547645 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0711 14 8450875 8453231 Lal22g0214 22 1318899 1321025 ECH
Lal22g0214 22 1318899 1321025 Lal22g0214 22 1318899 1321025 ECH
Lal18g1391 18 16184292 16187242 Lal22g0214 22 1318899 1321025 LSH
Lal22g0214 22 1318899 1321025 Lal6g0225 6 1496375 1498587 LSH