Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal22g0209 | ATGGTACATTGTAATTGCTTAGGAGTGGTTGTCAGTCAAAGGCATCCCCTATCAGCCTTCGAAGCATATATCTCTGGTTCGTGGCAAGCTGTGGAGTTCATAACAATTGAGTCTGGAACTTTGTACATGCATTTGAAAAGTAATCCACCTGTTGCTATGGAGAAAGGCCCATTTTCGGATATTAGGGTAAAGTCGAGGAAAGCTGTTTATTCAGATTGCTCCAGTTTTTTACGGCGTGGAATCGACATATCTGTGCTGTCACCCCCCAAGAAGACTGATAATTCTGATGGACTAAATCTCAAGCCTGTATGGCTTGATGCTAGAATAAGTTCTATACAGAGAAAGCCCCATAATTTTGAGTGTCAATGTCAGTTTTATGTGAACTTCTATGTCAATCAAGGTTCACTTGGTGCAGAGCTAAGAACTCTTAGAAAGGAGGTCAAGGTATTTGGAATAAATCAAATCTCCATCCTCCAAAAGCTTGACCATAGTCCTTGTGAAAACGAGTTCTACCGTTGGGCTTCATCTGAGGACTGCCCTACATTACCAAATACAAAGTTACTTCTGGGGAAATTCTTAGCTGACATTTCATGGTTAGTGGTCGCATCATTTGTGAAGAAGGTTCAATTCTGTGTACGATCTTTTGAAGACAAGCTTGTCTATCAAATTATGGAAAGTGAAGTTGCTAGCTCTTCATTGAACACTGAGTCTCCAATAAATGTTTTAAGTTTCACATTTGACGATGAGGATGGCCTGTTAGTATCCAATGTTTCTCAAGTTGTTACTCCTAAGCCCAAGACTATTGACTATGCACATGAATCTCATGAAGATAAAGTCTCTCCATCATCTTATAATGTTGAGGGCTTACGGCGTTCCAAACGCCGGCATGTCCAGCCTGAGCGTTACATTGGATGCAGTGATGTTACTGAGTTTGATGTTGGTTCATTTAGAACCCAGCCACCAATGAAGATAGACACAGCGGCGAAAGAGGATGATGAATTGGAATTGCCATTATCATGTCTGTTTGGTTTGAAACAAAAACCTGTACTAGATTCTCTTTGCAATTCTCAAAAGATCAGCAAGATGAATACCTGCGGGGAGCTTCTAGTGTACAATAGGAGGAGGAGGAAGCCTAAAACCAAGAAGCTAAAGTCAATTCGTAGCGATCAAAATCCACTTGCTATTGTTCCTCTTCCAGATCAAGTAGATCCAGTAAGTGTTAAGCACTGTGATCTGAATGACAAGGTTACTGGAAGTCATGGACGTGAATCTTCTGAAACTCCTTTAAAAAATTATCATCATCATCATCTAGCAAGTAGCTCTAAACAAAAGTGGAAAAATGTAAATCTGTTAACATTTGATCCAAATAGTATGCGCACACAGGCAGATGATGCAGAAAAGATTGACGGCTTTTCTTCAAGAAGCCACTTTGGTTATGGCACATCCAAGATAAAGAGTAAGAATTCATTTTTTATGGATGATATGGACCTCGGAGGAACTAAATGGGAAGGAATATGTTCCAGCAAAGGAGCTCAAGAGAAAACATATCGCCCGATATATTCAAGAAGTAGAAATCATGAAGAAGAAAGAAGATATAAAGACAGAAGCTTAAATGCAACTGCCTACAAGGATTTGATAAATTCATACTTGAGGAATATCAATACAAAACCAACAACAGAAGAACCACCTGTCACTGACCAGTGGAAGCAATTCCAGGAAACAAGTGGCTTTAGCGAAAAGAAGGAAACAGGAACAGAAATATCTGAGGGAGAGGATGAGAATGATGAAGAATCTGAAATTGAGATGTTGTGGCGAGAAATGGAAGTGTCATTGGCATCAAGTTATCTTGAAGATGCAGAGGGCTCAAATGCTGGCAATCCTGCTGAGACCTTGGAAAAACTGGAACAAGGATGTCTACATGACGAAAAATATCAAAGAATGGATGATCAAATTGGAATTTACTGCCGCATATGTGGCCATGTGTTCATCGACATTAAAGATATGTTTCCACCCTTTCTTGAACGGTCAGAGCGGCACCATGAGGAAAAGCAGTGCATTGGAGAAGATTCAGATTTAGAGTTAGAAGCTGATGAGCATGATGATTATCATCTTTTCTCGACCAATGCTCCTCCTGATGATGAACCTAAAACTGAAGAAAGTGAAAACGTGTGGGCATTAATTCCTGAACTTAGATCGAAGTTGCATGCCCACCAAAAGAAAGCTTTTGAGTTCCTTTGGCAAAATATTGCAGGGTCTACGGAACCAGCACTTCTGGAAGCACATTCCAAAAAAACAGGTGGTTGTGTGATATCTCATACTCCTGGAGCCGGCAAAACTTTTCTCATTATTGCTTTTCTTGTAAGTTACTTAAAGTTGTTCCCAGGGAAGAGGCCTCTGGTTCTGGCTCCTAAGACAACACTATATACCTGGTATAAGGAATTCATCAAGTGGAAGATTCCAATACCGGTGTATTTGATTCATGGTCGCAGAACCTACAGGGTATTCAAGCAGAAAAACTCAATGATTTTTCCTGGAATACCCAAGCCTACTGAGGATGTCAAACATGTTTTGGATTGCCTGGAGAAGATAAAAAATTGGCACTCACAACCCAGTGTTCTAATCATGGGTTATACTTCCTTTTTGACATTGATGAGAGAGGATTCAAAATATGCACACAGGAAGTATATGGCAAAAGTATTGAGGGAAAGTCCTGGGATGCTGATACTGGATGAAGGGCACAATCCTCGGAGCACTAAATCACGGTTGAGAAAAGTTTTGATGAAAGTACACACGGAATTGAGAATACTACTTTCTGGTACATTGTTTCAAAACAACTTTTGTGAATACTTCAACACTCTCTGCTTGGCTAGACCAAAGTTTGCTCATGAAGTGCTGAAAGCATTAGACCCAAAATACAAGAGGAAAAAGAAGAAAGGAGCTAATTATGAGTCCCGTGCTAGAAAACTATTCTTAGATACAATTGCTAAGAAAATTGACTCACATGATAATGAGGAGAGGATGCATGGTCTAAACATGTTGAGAAATGTGACTCATGGTTTTATTGATGTTTATGAAGGCGGGAGTTCTGATGGTCTGCCTGGTTTACAAATTTACACACTGCTAATGAATCCAACCGAAACACAGCATGAGATGCTGCATACATTGCACGAGAAAATGTCTCAGTGCAATGGGTACCCACTGGAGATAGAGCTTTTGATAACTCTTGGATCCATACATCCTTGGTTGATCAAAACAGCTGTGTGTGCTGAGAAGTTTTTCAGTAAAGAGCAATTGAGCAACCTAGAGAAATGCAAGTTCGATTTGAAAATCGGGTCAAAAGTAAAATTTGTTTTGAGCCTTATCTATCGTGTTGTCAAGAATGAGAAGGTCCTTATCTTTTGCCACAACATTGCACCTGTGAAATTATTTCTAGAATATTTTGAGAGGTACTTTAGATGGCAAAGAGGTAGGGAAGTTTTGGTGCTGACTGGGGAACTCGAGCTATTTGAACGCGGGAGAGTGATGGATAAGTTTGAGGAGCCTGGTGGAGTGTCAAAGATACTCCTTGCTTCAATTACAGCTTGTGCCGAAGGTATTAGTTTGACTGCAGCTTCTCGGGTAATCATGTTGGACTCAGAGTGGAACCCATCTAAGACAAAGCAGGCTATTGCCCGAGCTTTTCGGCCTGGTCAGCAAAAAATGGTTTATGTGTATCAGCTCTTGGTATCAGGTTCACTAGAGGAGGATAAGTACAAAAGAACCACTTGGAAAGAGTGGGTGTCAAACATGATTTTCAGTGAGGATTTTGTGGAGGATCCTTCCCAATGGCAAGCTAATAAGCTTGAAGATGACATTCTGCGCGAAATGGTTGAAGAAGACAAGTCTAAATCATTCCATATGATATTGAAGAATGAAAAAGCTTCAACAAACAGAGAGCACAGGACCATCCAAAATTAA | 3957 | 0.4028 | MVHCNCLGVVVSQRHPLSAFEAYISGSWQAVEFITIESGTLYMHLKSNPPVAMEKGPFSDIRVKSRKAVYSDCSSFLRRGIDISVLSPPKKTDNSDGLNLKPVWLDARISSIQRKPHNFECQCQFYVNFYVNQGSLGAELRTLRKEVKVFGINQISILQKLDHSPCENEFYRWASSEDCPTLPNTKLLLGKFLADISWLVVASFVKKVQFCVRSFEDKLVYQIMESEVASSSLNTESPINVLSFTFDDEDGLLVSNVSQVVTPKPKTIDYAHESHEDKVSPSSYNVEGLRRSKRRHVQPERYIGCSDVTEFDVGSFRTQPPMKIDTAAKEDDELELPLSCLFGLKQKPVLDSLCNSQKISKMNTCGELLVYNRRRRKPKTKKLKSIRSDQNPLAIVPLPDQVDPVSVKHCDLNDKVTGSHGRESSETPLKNYHHHHLASSSKQKWKNVNLLTFDPNSMRTQADDAEKIDGFSSRSHFGYGTSKIKSKNSFFMDDMDLGGTKWEGICSSKGAQEKTYRPIYSRSRNHEEERRYKDRSLNATAYKDLINSYLRNINTKPTTEEPPVTDQWKQFQETSGFSEKKETGTEISEGEDENDEESEIEMLWREMEVSLASSYLEDAEGSNAGNPAETLEKLEQGCLHDEKYQRMDDQIGIYCRICGHVFIDIKDMFPPFLERSERHHEEKQCIGEDSDLELEADEHDDYHLFSTNAPPDDEPKTEESENVWALIPELRSKLHAHQKKAFEFLWQNIAGSTEPALLEAHSKKTGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRVFKQKNSMIFPGIPKPTEDVKHVLDCLEKIKNWHSQPSVLIMGYTSFLTLMREDSKYAHRKYMAKVLRESPGMLILDEGHNPRSTKSRLRKVLMKVHTELRILLSGTLFQNNFCEYFNTLCLARPKFAHEVLKALDPKYKRKKKKGANYESRARKLFLDTIAKKIDSHDNEERMHGLNMLRNVTHGFIDVYEGGSSDGLPGLQIYTLLMNPTETQHEMLHTLHEKMSQCNGYPLEIELLITLGSIHPWLIKTAVCAEKFFSKEQLSNLEKCKFDLKIGSKVKFVLSLIYRVVKNEKVLIFCHNIAPVKLFLEYFERYFRWQRGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVSGSLEEDKYKRTTWKEWVSNMIFSEDFVEDPSQWQANKLEDDILREMVEEDKSKSFHMILKNEKASTNREHRTIQN | 1318 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal22g0209 | 1318 | PANTHER | SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 | 20 | 1309 | - | - | |
Lal22g0209 | 1318 | MobiDBLite | consensus disorder prediction | 554 | 574 | - | - | |
Lal22g0209 | 1318 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1030 | 1293 | IPR027417 | - | |
Lal22g0209 | 1318 | Gene3D | - | 707 | 999 | IPR038718 | - | |
Lal22g0209 | 1318 | MobiDBLite | consensus disorder prediction | 554 | 596 | - | - | |
Lal22g0209 | 1318 | Pfam | Helicase conserved C-terminal domain | 1113 | 1229 | IPR001650 | - | |
Lal22g0209 | 1318 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1116 | 1282 | IPR001650 | - | |
Lal22g0209 | 1318 | CDD | DEXHc_ATRX-like | 734 | 960 | - | - | |
Lal22g0209 | 1318 | SMART | ultradead3 | 730 | 975 | IPR014001 | - | |
Lal22g0209 | 1318 | CDD | SF2_C_SNF | 1105 | 1241 | - | - | |
Lal22g0209 | 1318 | Gene3D | - | 1033 | 1318 | IPR027417 | - | |
Lal22g0209 | 1318 | PANTHER | SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED | 20 | 1309 | IPR044567 | GO:0080188 | |
Lal22g0209 | 1318 | SMART | helicmild6 | 1145 | 1230 | IPR001650 | - | |
Lal22g0209 | 1318 | Pfam | SNF2-related domain | 739 | 996 | IPR000330 | GO:0005524|GO:0140658 | |
Lal22g0209 | 1318 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 759 | 959 | IPR014001 | - | |
Lal22g0209 | 1318 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 733 | 979 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal22g0209 | Lal-Chr22 | 1285130 | 1293213 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal22g0209 | 1109 | 1248 | RAD5 or RAD16-like Gene Family | AT5G43530 | 35.664 | 8.04e-13 | 71.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Lal22g0209 | SNF2_N | 1.9e-17 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal22g0209 | K10875 | - | gmx:100811703 | 1748.02 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal22g0209 | 22 | 1285130 | 1293213 | Lal22g0209 | 22 | 1285130 | 1293213 | ECH | |
Lal22g0209 | 22 | 1285130 | 1293213 | Lal6g0220 | 6 | 1465087 | 1472790 | LSH |