Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0209 ATGGTACATTGTAATTGCTTAGGAGTGGTTGTCAGTCAAAGGCATCCCCTATCAGCCTTCGAAGCATATATCTCTGGTTCGTGGCAAGCTGTGGAGTTCATAACAATTGAGTCTGGAACTTTGTACATGCATTTGAAAAGTAATCCACCTGTTGCTATGGAGAAAGGCCCATTTTCGGATATTAGGGTAAAGTCGAGGAAAGCTGTTTATTCAGATTGCTCCAGTTTTTTACGGCGTGGAATCGACATATCTGTGCTGTCACCCCCCAAGAAGACTGATAATTCTGATGGACTAAATCTCAAGCCTGTATGGCTTGATGCTAGAATAAGTTCTATACAGAGAAAGCCCCATAATTTTGAGTGTCAATGTCAGTTTTATGTGAACTTCTATGTCAATCAAGGTTCACTTGGTGCAGAGCTAAGAACTCTTAGAAAGGAGGTCAAGGTATTTGGAATAAATCAAATCTCCATCCTCCAAAAGCTTGACCATAGTCCTTGTGAAAACGAGTTCTACCGTTGGGCTTCATCTGAGGACTGCCCTACATTACCAAATACAAAGTTACTTCTGGGGAAATTCTTAGCTGACATTTCATGGTTAGTGGTCGCATCATTTGTGAAGAAGGTTCAATTCTGTGTACGATCTTTTGAAGACAAGCTTGTCTATCAAATTATGGAAAGTGAAGTTGCTAGCTCTTCATTGAACACTGAGTCTCCAATAAATGTTTTAAGTTTCACATTTGACGATGAGGATGGCCTGTTAGTATCCAATGTTTCTCAAGTTGTTACTCCTAAGCCCAAGACTATTGACTATGCACATGAATCTCATGAAGATAAAGTCTCTCCATCATCTTATAATGTTGAGGGCTTACGGCGTTCCAAACGCCGGCATGTCCAGCCTGAGCGTTACATTGGATGCAGTGATGTTACTGAGTTTGATGTTGGTTCATTTAGAACCCAGCCACCAATGAAGATAGACACAGCGGCGAAAGAGGATGATGAATTGGAATTGCCATTATCATGTCTGTTTGGTTTGAAACAAAAACCTGTACTAGATTCTCTTTGCAATTCTCAAAAGATCAGCAAGATGAATACCTGCGGGGAGCTTCTAGTGTACAATAGGAGGAGGAGGAAGCCTAAAACCAAGAAGCTAAAGTCAATTCGTAGCGATCAAAATCCACTTGCTATTGTTCCTCTTCCAGATCAAGTAGATCCAGTAAGTGTTAAGCACTGTGATCTGAATGACAAGGTTACTGGAAGTCATGGACGTGAATCTTCTGAAACTCCTTTAAAAAATTATCATCATCATCATCTAGCAAGTAGCTCTAAACAAAAGTGGAAAAATGTAAATCTGTTAACATTTGATCCAAATAGTATGCGCACACAGGCAGATGATGCAGAAAAGATTGACGGCTTTTCTTCAAGAAGCCACTTTGGTTATGGCACATCCAAGATAAAGAGTAAGAATTCATTTTTTATGGATGATATGGACCTCGGAGGAACTAAATGGGAAGGAATATGTTCCAGCAAAGGAGCTCAAGAGAAAACATATCGCCCGATATATTCAAGAAGTAGAAATCATGAAGAAGAAAGAAGATATAAAGACAGAAGCTTAAATGCAACTGCCTACAAGGATTTGATAAATTCATACTTGAGGAATATCAATACAAAACCAACAACAGAAGAACCACCTGTCACTGACCAGTGGAAGCAATTCCAGGAAACAAGTGGCTTTAGCGAAAAGAAGGAAACAGGAACAGAAATATCTGAGGGAGAGGATGAGAATGATGAAGAATCTGAAATTGAGATGTTGTGGCGAGAAATGGAAGTGTCATTGGCATCAAGTTATCTTGAAGATGCAGAGGGCTCAAATGCTGGCAATCCTGCTGAGACCTTGGAAAAACTGGAACAAGGATGTCTACATGACGAAAAATATCAAAGAATGGATGATCAAATTGGAATTTACTGCCGCATATGTGGCCATGTGTTCATCGACATTAAAGATATGTTTCCACCCTTTCTTGAACGGTCAGAGCGGCACCATGAGGAAAAGCAGTGCATTGGAGAAGATTCAGATTTAGAGTTAGAAGCTGATGAGCATGATGATTATCATCTTTTCTCGACCAATGCTCCTCCTGATGATGAACCTAAAACTGAAGAAAGTGAAAACGTGTGGGCATTAATTCCTGAACTTAGATCGAAGTTGCATGCCCACCAAAAGAAAGCTTTTGAGTTCCTTTGGCAAAATATTGCAGGGTCTACGGAACCAGCACTTCTGGAAGCACATTCCAAAAAAACAGGTGGTTGTGTGATATCTCATACTCCTGGAGCCGGCAAAACTTTTCTCATTATTGCTTTTCTTGTAAGTTACTTAAAGTTGTTCCCAGGGAAGAGGCCTCTGGTTCTGGCTCCTAAGACAACACTATATACCTGGTATAAGGAATTCATCAAGTGGAAGATTCCAATACCGGTGTATTTGATTCATGGTCGCAGAACCTACAGGGTATTCAAGCAGAAAAACTCAATGATTTTTCCTGGAATACCCAAGCCTACTGAGGATGTCAAACATGTTTTGGATTGCCTGGAGAAGATAAAAAATTGGCACTCACAACCCAGTGTTCTAATCATGGGTTATACTTCCTTTTTGACATTGATGAGAGAGGATTCAAAATATGCACACAGGAAGTATATGGCAAAAGTATTGAGGGAAAGTCCTGGGATGCTGATACTGGATGAAGGGCACAATCCTCGGAGCACTAAATCACGGTTGAGAAAAGTTTTGATGAAAGTACACACGGAATTGAGAATACTACTTTCTGGTACATTGTTTCAAAACAACTTTTGTGAATACTTCAACACTCTCTGCTTGGCTAGACCAAAGTTTGCTCATGAAGTGCTGAAAGCATTAGACCCAAAATACAAGAGGAAAAAGAAGAAAGGAGCTAATTATGAGTCCCGTGCTAGAAAACTATTCTTAGATACAATTGCTAAGAAAATTGACTCACATGATAATGAGGAGAGGATGCATGGTCTAAACATGTTGAGAAATGTGACTCATGGTTTTATTGATGTTTATGAAGGCGGGAGTTCTGATGGTCTGCCTGGTTTACAAATTTACACACTGCTAATGAATCCAACCGAAACACAGCATGAGATGCTGCATACATTGCACGAGAAAATGTCTCAGTGCAATGGGTACCCACTGGAGATAGAGCTTTTGATAACTCTTGGATCCATACATCCTTGGTTGATCAAAACAGCTGTGTGTGCTGAGAAGTTTTTCAGTAAAGAGCAATTGAGCAACCTAGAGAAATGCAAGTTCGATTTGAAAATCGGGTCAAAAGTAAAATTTGTTTTGAGCCTTATCTATCGTGTTGTCAAGAATGAGAAGGTCCTTATCTTTTGCCACAACATTGCACCTGTGAAATTATTTCTAGAATATTTTGAGAGGTACTTTAGATGGCAAAGAGGTAGGGAAGTTTTGGTGCTGACTGGGGAACTCGAGCTATTTGAACGCGGGAGAGTGATGGATAAGTTTGAGGAGCCTGGTGGAGTGTCAAAGATACTCCTTGCTTCAATTACAGCTTGTGCCGAAGGTATTAGTTTGACTGCAGCTTCTCGGGTAATCATGTTGGACTCAGAGTGGAACCCATCTAAGACAAAGCAGGCTATTGCCCGAGCTTTTCGGCCTGGTCAGCAAAAAATGGTTTATGTGTATCAGCTCTTGGTATCAGGTTCACTAGAGGAGGATAAGTACAAAAGAACCACTTGGAAAGAGTGGGTGTCAAACATGATTTTCAGTGAGGATTTTGTGGAGGATCCTTCCCAATGGCAAGCTAATAAGCTTGAAGATGACATTCTGCGCGAAATGGTTGAAGAAGACAAGTCTAAATCATTCCATATGATATTGAAGAATGAAAAAGCTTCAACAAACAGAGAGCACAGGACCATCCAAAATTAA 3957 0.4028 MVHCNCLGVVVSQRHPLSAFEAYISGSWQAVEFITIESGTLYMHLKSNPPVAMEKGPFSDIRVKSRKAVYSDCSSFLRRGIDISVLSPPKKTDNSDGLNLKPVWLDARISSIQRKPHNFECQCQFYVNFYVNQGSLGAELRTLRKEVKVFGINQISILQKLDHSPCENEFYRWASSEDCPTLPNTKLLLGKFLADISWLVVASFVKKVQFCVRSFEDKLVYQIMESEVASSSLNTESPINVLSFTFDDEDGLLVSNVSQVVTPKPKTIDYAHESHEDKVSPSSYNVEGLRRSKRRHVQPERYIGCSDVTEFDVGSFRTQPPMKIDTAAKEDDELELPLSCLFGLKQKPVLDSLCNSQKISKMNTCGELLVYNRRRRKPKTKKLKSIRSDQNPLAIVPLPDQVDPVSVKHCDLNDKVTGSHGRESSETPLKNYHHHHLASSSKQKWKNVNLLTFDPNSMRTQADDAEKIDGFSSRSHFGYGTSKIKSKNSFFMDDMDLGGTKWEGICSSKGAQEKTYRPIYSRSRNHEEERRYKDRSLNATAYKDLINSYLRNINTKPTTEEPPVTDQWKQFQETSGFSEKKETGTEISEGEDENDEESEIEMLWREMEVSLASSYLEDAEGSNAGNPAETLEKLEQGCLHDEKYQRMDDQIGIYCRICGHVFIDIKDMFPPFLERSERHHEEKQCIGEDSDLELEADEHDDYHLFSTNAPPDDEPKTEESENVWALIPELRSKLHAHQKKAFEFLWQNIAGSTEPALLEAHSKKTGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRVFKQKNSMIFPGIPKPTEDVKHVLDCLEKIKNWHSQPSVLIMGYTSFLTLMREDSKYAHRKYMAKVLRESPGMLILDEGHNPRSTKSRLRKVLMKVHTELRILLSGTLFQNNFCEYFNTLCLARPKFAHEVLKALDPKYKRKKKKGANYESRARKLFLDTIAKKIDSHDNEERMHGLNMLRNVTHGFIDVYEGGSSDGLPGLQIYTLLMNPTETQHEMLHTLHEKMSQCNGYPLEIELLITLGSIHPWLIKTAVCAEKFFSKEQLSNLEKCKFDLKIGSKVKFVLSLIYRVVKNEKVLIFCHNIAPVKLFLEYFERYFRWQRGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVSGSLEEDKYKRTTWKEWVSNMIFSEDFVEDPSQWQANKLEDDILREMVEEDKSKSFHMILKNEKASTNREHRTIQN 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0209 1318 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1309 - -
Lal22g0209 1318 MobiDBLite consensus disorder prediction 554 574 - -
Lal22g0209 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1030 1293 IPR027417 -
Lal22g0209 1318 Gene3D - 707 999 IPR038718 -
Lal22g0209 1318 MobiDBLite consensus disorder prediction 554 596 - -
Lal22g0209 1318 Pfam Helicase conserved C-terminal domain 1113 1229 IPR001650 -
Lal22g0209 1318 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1116 1282 IPR001650 -
Lal22g0209 1318 CDD DEXHc_ATRX-like 734 960 - -
Lal22g0209 1318 SMART ultradead3 730 975 IPR014001 -
Lal22g0209 1318 CDD SF2_C_SNF 1105 1241 - -
Lal22g0209 1318 Gene3D - 1033 1318 IPR027417 -
Lal22g0209 1318 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1309 IPR044567 GO:0080188
Lal22g0209 1318 SMART helicmild6 1145 1230 IPR001650 -
Lal22g0209 1318 Pfam SNF2-related domain 739 996 IPR000330 GO:0005524|GO:0140658
Lal22g0209 1318 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 759 959 IPR014001 -
Lal22g0209 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 733 979 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0209 Lal-Chr22 1285130 1293213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0209 1109 1248 RAD5 or RAD16-like Gene Family AT5G43530 35.664 8.04e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal22g0209 SNF2_N 1.9e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0209 K10875 - gmx:100811703 1748.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0209 22 1285130 1293213 Lal22g0209 22 1285130 1293213 ECH
Lal22g0209 22 1285130 1293213 Lal6g0220 6 1465087 1472790 LSH