Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0193 ATGAGGAAAAGAGAAAGGGAAAACCCTTGTGCGGTGTGTGGCCACTATCACAAGTACGAAGAAGGCGAAGTGTGTTCAATTTGCGGCCACCGGTTGACGGTCGGAGAGAAAACTTCGGTGCAAGTTAGCGCCTTCCCATCGGTGATCTTGCCGGAGTTTCTTTACCTCGGAGGCTACGACAACGCTTCGCGCTCCGAGATTCTCAAGACTCAGGGAATCACTCGCATCCTTAATACTGTCCCTTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCACTGCCTCCCAGATAGCAAAACTTTGCCATTTGATGAAGGAATTCAGTTTTTAGAGCAATGTGAGAAGGACAAGGCTCGTGTGCTGGTTCATTGCATGTCAGGAAAGAATCGGTCTCCAGCTATTGTGATTGCATACTTGATGAAGTCCAAAGGATGGAGACTTGCACAGAGTTATCAATGGGTAAAGGAACGGAGACCATCTGTTGAATTAACTGAAGGTGTATACCAGCAACTGCAGGAGTTAGAGCACAAGATCTTCGGATCAAATGATGGTGGAAGCTCTATGCTGCCTGGTTTTCCACCTGCAAGTTCATTTAGCTTTGGCTTCCCAAAGATCAATGATTCACCTCCACTTCCTGCTTTCGGCGGTGTAGGAACTAATTCCATTTTCGCCCGACCACCCCTAGACATTGCTCCAACCGCATTTACATTCGGAGCTGGTCCAGCGCAGAATAGCGCGACTGGAAGCACATTTACTGCAAATCCACCTAATAATCCACATGGTTCTGATATCCAAATGGATGGCTCTTGA 813 0.4686 MRKRERENPCAVCGHYHKYEEGEVCSICGHRLTVGEKTSVQVSAFPSVILPEFLYLGGYDNASRSEILKTQGITRILNTVPSCQNLYKNSFTYHCLPDSKTLPFDEGIQFLEQCEKDKARVLVHCMSGKNRSPAIVIAYLMKSKGWRLAQSYQWVKERRPSVELTEGVYQQLQELEHKIFGSNDGGSSMLPGFPPASSFSFGFPKINDSPPLPAFGGVGTNSIFARPPLDIAPTAFTFGAGPAQNSATGSTFTANPPNNPHGSDIQMDGS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0193 270 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 102 170 IPR000387 GO:0016311|GO:0016791
Lal22g0193 270 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 183 IPR029021 -
Lal22g0193 270 Gene3D Protein tyrosine phosphatase superfamily 39 186 IPR029021 -
Lal22g0193 270 MobiDBLite consensus disorder prediction 242 270 - -
Lal22g0193 270 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 270 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Lal22g0193 270 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 270 - -
Lal22g0193 270 CDD DSP_plant_IBR5-like 46 174 - -
Lal22g0193 270 ProSiteProfiles Dual specificity protein phosphatase domain profile. 45 181 IPR020422 GO:0006470|GO:0008138
Lal22g0193 270 SMART dsp_5 45 178 IPR020422 GO:0006470|GO:0008138
Lal22g0193 270 ProSitePatterns Tyrosine specific protein phosphatases active site. 123 133 IPR016130 GO:0016311|GO:0016791
Lal22g0193 270 Pfam Dual specificity phosphatase, catalytic domain 54 177 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0193 Lal-Chr22 1208517 1212764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0193 1 165 Protein tyrosine phosphatase (PTP) family AT2G04550 73.964 2.26e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0193 K04459 - gmx:100808721 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1411 18 16271801 16275501 Lal22g0193 22 1208517 1212764 LSH
Lal22g0193 22 1208517 1212764 Lal6g0202 6 1379220 1383809 LSH