Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0188 ATGGAAAATTCCGACGATAACGAACCCGAACAGAAGAGGCCTCACCGCACGCCCAGAAACTCCACAAATAACAAAAACGTCGATGCAGGAGTCGTAGAGGTCCATAAGCACCTTGTTCAACAAACAAACACCCAAAAACATAATTTGCAAGATCTTGAAGAAAAAATTAAAAATCTAAAAGAAAGACAAAAGGCTTATGATGACTTGTTAATTGCAGTGAACCAATGCTGGATTCAGTTAGTTAATGATCTAGTTCTTCTTGGTATACAAGCTGGGAGAGGCCTGGATGCATTGAGAACTTTGGTTAACCCTGATAATCCTCAAGGTTCACTTCCCTTGTGTCCCGTGGAGGATATATTTCTTTGCAATTTAATCCAGAAAGATTGTGTTGAAGGAAGCTGTAATGATGAGATTGTTAATTATGTTGAGGAAGCTCTTTCCTTGCGTCAGTCATCTACATTGGAGTTGTTGAAACTCCTTCAAGATACTATTGATGCTCAGAGAGAAAAAATTGGCAGTATAGCCCAGGTTTTGCATGGAGATTTATCTTCAGAAGATCTTATTATCCAAATGTCTAAGGTTGACGATATGATGAATGAGGATGCATATAATTTACGTGAAGTGATTGATGCTCTTAATGCGATGCATAAAGAGTATGCTGCTGGTATTCAAAATTATATTAGTGGGAACTTACAAGATCAAGCTGACATTAAACACCTTACAGGTGAGCTTGATGAGAGCTTGACTGAACTTGAAGAGTGTAGAAGGAAACTAGTCAATCTGAAAATGCAAAAGGATTCAGCAGCAGGGATGCGTTCCCACAATTCAAATGCAGTGAATGGGAACCTGTCTCCTGAAAAGCCTGTAGAGAGGACTACGAGTTCACGTGAGTTGAAGGAATCAATTGAAGAATCCAAGATAGTGGTTGCTGGTCGTCTTTCTGAACTTCAAGATGCACGGGAAGACAATCAAATTTTGACAAAGCAATTACAAGATCTTCAGAATGAACTGAATGATGACAAGTATGTACACTCTTCCCGAATATACTCTTTGGCAAATGATCAACTTCAACATTGGAATACCGAATTGGAACGGTATAAAATGTTGACAGAGTCTCTGAAGGCTGGAAGTGTTCATGTTACAAAATGGGAGAAAGAACTAAATTTGAAATTGGAGTCTGCTGATACTGCAAGGCGTACCAGGGACAACTCTGACTATAAGATTGAAGAGCTAGAGCTTCAATTGCAGAAGTGTACTATCGAAAAGAATGATCTTGAAATGAAGATGGAAGAGGCTATACAGGATACTGGGAGAAAGGATATCAAATCCGAGTTTCATGTGATGTCCTCTGCTTTGTCTAATGAAATGGGGATGATGGATGCTCAATTGAAGCGATGGAAGGATACAGCTCAGGAGGCTGTATTTGTACGTGAAAAAGTGAATCATTTCAGAGCATATTTGAGTGCGAAGACAAGCGAACTTACAAGCCTTGTAAACAGATCTGCTGAACAGAATTTGGAAATCAAGTCTTTAAAGGCATTGATTGAAAAGTTAGAGAGGGATAATATGGAGTTAGGACTCATTTGTGACATGCACGGTGATGAGAATTATGAAAAAAGCACTATAGCGGAAATTAGAGAATCTGAAAGACGTGCACGCTCTCAAGCTGAAGGACTGAAAAATGCTTTAGATGAACATAGTCTAGTGTTGAGAGTAAAAGCTGCTAATGAAGTTGAAGCTGCTTGTGAACAAAGGCTGTCTGCCGCAGAAGCTGAACTAGAGGACCTGAAGGCCCAGCTGGATGCATCTGAGAGAGATGTTTTGGAGTTGAGTGAAGCTATTAGAGTTAAAGATACTGAGGCAGAGACATATATGTCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACGCAGAACCAACATCTGTTGCAGATGGTAGCTGAGAGAGATGACTATAATATTAAGCTTGTATCAGAGAGCGTCAAGACAAAACAGGCACATAGCACCTTACTGTCTGAGAAGCAGGCCTTGGCAAAGCAACTTCAGCAAATTAATGCTTCATTAGAAAATTCAAAGACGAGGATTGTACACAGTGAAGAGCAGATGAAAGCTCTTCTATCGGAAGCCATGAAATCTACTCAAGAGGAAAAACACCTTGCACTTACCCTGGAATTTGCGAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTTCTCAAGTCTAATGTTTCCTCTTCAGAGAAAGAATACAACCAAGTTCAGAAAGATGTGGAAGCCATGGAAATGGAATTGGAAAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGATGAACTCATGGAAATGAACAGACAAATTGCTGAGCTGAGCTCTGAAACTGGAGAAGAAGCAGTACAAAAGCTCGAAGATGAATTAAAGGTTTGCAAGAACATGATCAAGTGTACTGTCTGTTATGATCGTCTAAAGGAGGTTGTGATTGTGAAGTGCTGTCATATGTTCTGCAGTCAATGCATTCAAAGAAATCTAGAGCTCCGTCACCGCAAGTGTCCTGCTTGTGGAACAGCATTTGGTCAGAGTGATGTTCGCCTTGTTAAGATATGA 2610 0.4019 MENSDDNEPEQKRPHRTPRNSTNNKNVDAGVVEVHKHLVQQTNTQKHNLQDLEEKIKNLKERQKAYDDLLIAVNQCWIQLVNDLVLLGIQAGRGLDALRTLVNPDNPQGSLPLCPVEDIFLCNLIQKDCVEGSCNDEIVNYVEEALSLRQSSTLELLKLLQDTIDAQREKIGSIAQVLHGDLSSEDLIIQMSKVDDMMNEDAYNLREVIDALNAMHKEYAAGIQNYISGNLQDQADIKHLTGELDESLTELEECRRKLVNLKMQKDSAAGMRSHNSNAVNGNLSPEKPVERTTSSRELKESIEESKIVVAGRLSELQDAREDNQILTKQLQDLQNELNDDKYVHSSRIYSLANDQLQHWNTELERYKMLTESLKAGSVHVTKWEKELNLKLESADTARRTRDNSDYKIEELELQLQKCTIEKNDLEMKMEEAIQDTGRKDIKSEFHVMSSALSNEMGMMDAQLKRWKDTAQEAVFVREKVNHFRAYLSAKTSELTSLVNRSAEQNLEIKSLKALIEKLERDNMELGLICDMHGDENYEKSTIAEIRESERRARSQAEGLKNALDEHSLVLRVKAANEVEAACEQRLSAAEAELEDLKAQLDASERDVLELSEAIRVKDTEAETYMSEIETIGQAYEDMQTQNQHLLQMVAERDDYNIKLVSESVKTKQAHSTLLSEKQALAKQLQQINASLENSKTRIVHSEEQMKALLSEAMKSTQEEKHLALTLEFAKWELADAEKELKFLKSNVSSSEKEYNQVQKDVEAMEMELESERSSRKKLEDELMEMNRQIAELSSETGEEAVQKLEDELKVCKNMIKCTVCYDRLKEVVIVKCCHMFCSQCIQRNLELRHRKCPACGTAFGQSDVRLVKI 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0188 869 ProSitePatterns Zinc finger RING-type signature. 832 841 IPR017907 -
Lal22g0188 869 Coils Coil 237 264 - -
Lal22g0188 869 CDD RING-HC_BRE1_like 815 856 - -
Lal22g0188 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 801 868 IPR013083 -
Lal22g0188 869 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 15 869 - -
Lal22g0188 869 MobiDBLite consensus disorder prediction 269 289 - -
Lal22g0188 869 Coils Coil 674 711 - -
Lal22g0188 869 Coils Coil 572 613 - -
Lal22g0188 869 Coils Coil 726 795 - -
Lal22g0188 869 Coils Coil 501 528 - -
Lal22g0188 869 PANTHER RING FINGER PROTEIN-RELATED 15 869 IPR013956 GO:0004842|GO:0010390
Lal22g0188 869 SUPERFAMILY RING/U-box 816 860 - -
Lal22g0188 869 Coils Coil 542 562 - -
Lal22g0188 869 Coils Coil 42 69 - -
Lal22g0188 869 Coils Coil 408 435 - -
Lal22g0188 869 MobiDBLite consensus disorder prediction 1 26 - -
Lal22g0188 869 Pfam Zinc finger, C3HC4 type (RING finger) 816 855 - -
Lal22g0188 869 SMART ring_2 817 855 IPR001841 -
Lal22g0188 869 MobiDBLite consensus disorder prediction 266 298 - -
Lal22g0188 869 MobiDBLite consensus disorder prediction 1 17 - -
Lal22g0188 869 Coils Coil 316 336 - -
Lal22g0188 869 ProSiteProfiles Zinc finger RING-type profile. 817 855 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0188 Lal-Chr22 1181122 1192940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0188 790 864 RAD5 or RAD16-like Gene Family AT5G05130 26.190 1.45e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0188 K10696 - gmx:100796610 1201.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1418 18 16315463 16320221 Lal22g0188 22 1181122 1192940 LSH