Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0187 ATGCGCCACCGTGTCAGAAACGCAGATCCAACAACACCAAACGACGCCGTTCCACCACCACCAACCGAATCCACAAACCCTATCAAGGAAACGCGATTCCGCGGCGTAAGGAAGCGACCATGGGGTCGATTCGCCGCAGAGATAAGAGATCCATGGAAGAAAGCACGTGTCTGGTTAGGAACCTTCGATTCCGCCGAAGACGCTGCACGAGCTTACGATGCAGCCGCTCGATCCTTTCGAGGACCTAGAGCCAAAACCAATTTCCCTTTTTCTTCCTCAAACCCTTCCCAAATCGCAATCTATAACCGAGGTCTCGAAAACCGCCGTGGTCACCGGTTCACTGAACCGGTCAACCGCCCTACCAGCAGCGGCATGAGCAGCACCGTCGAGTCGTTCAGCGGACCTAGGGTTCCGTCATCATCGATCGCGATCCATCACCGGAGACTTGTTGATCCGGTTTCCGTCGACGATTGTCATAGCGATTGCGATTCTTCGTCGTCGGTGATCGATGATGAGGATTGCGTGCTCACCTCCTCGTTCCGGCAACCTATGTCGTTCGATCTCAACCTCCCTCCACCGGAGGATGACAACGGTGACGGCGGCGATTTCAATGCCGATGAACTTCTAGCCACCGCCTTGTGCCTCTGA 648 0.5525 MRHRVRNADPTTPNDAVPPPPTESTNPIKETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPRAKTNFPFSSSNPSQIAIYNRGLENRRGHRFTEPVNRPTSSGMSSTVESFSGPRVPSSSIAIHHRRLVDPVSVDDCHSDCDSSSSVIDDEDCVLTSSFRQPMSFDLNLPPPEDDNGDGGDFNADELLATALCL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0187 215 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Lal22g0187 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 27 188 - -
Lal22g0187 215 MobiDBLite consensus disorder prediction 1 31 - -
Lal22g0187 215 MobiDBLite consensus disorder prediction 116 132 - -
Lal22g0187 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 188 - -
Lal22g0187 215 SUPERFAMILY DNA-binding domain 32 91 IPR016177 GO:0003677
Lal22g0187 215 MobiDBLite consensus disorder prediction 112 132 - -
Lal22g0187 215 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Lal22g0187 215 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Lal22g0187 215 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Lal22g0187 215 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Lal22g0187 215 Gene3D AP2/ERF domain 31 91 IPR036955 GO:0003700|GO:0006355
Lal22g0187 215 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0187 Lal-Chr22 1173449 1174096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0187 28 215 AP2-EREBP Transcription Factor Family AT1G50640 50.485 8.27e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal22g0187 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0187 K09286 - cpap:110808864 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1419 18 16324136 16324774 Lal22g0187 22 1173449 1174096 LSH