Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0185 ATGTCAGAAAATAGTCACCCTCTCAAGAATGCTGTTTCTAATAACACTGGTGATAACATTGAAGGTGAAGCCGTTCTGCGTTTGAATATCAATGATAGTCAGGATAGAGATGCTGCTGCTCAATCTATCCCATTTCCAGAACGACCCGGTGAACCTGACTGCTTATATTATTTGAGGACTGGAATGTGTGGTTATGGGAGTGCCTGTCGCTATAACCACCCGGCTAATGTTTCACTGGGTATTCATTATGGTGAAGAACTCCCTGAGAGAGTTGGACAACCTGATTGTGAATATTTTGTTAAGACAGGGACATGCAAGTATGGTTCGACATGTAAATATCACCATCCCAGGGACAGGCGAGGTGCTGCTCCTGTATCATTCAATTCTTTAGGTCTTCCTATGCGCCAGGAAGAAAGATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGAGTCGCATGCAAGTTTCATCATCCTCAGATTGGAGCTTCCCCTGTGGCTGGATCTCCAACCTCAACAATTCTTCCTACATCTGGTTTACCATATGTTGGTGGGATTTCTGCATGGCAATTACCAAGAATGTCATATTTATCTGGGCAGGGCATTCAATCTTATGTGCCTCCTTTTCTGTCTTCTCCACAAGGCATTATACCTGCACAGAACTGGAATACCTACATGGGAAGTATGAGCGGTGCAATAACTACCGGTTTTCTTGGATCTAATTTTGTTTACGATACCATGAACCTCGGTGAACCACTTCTTGGTGGTCAGGTAATAAGTCCAGCTCTCCCAGAGAGACCTGGACAGCCAGAATGTAAATACTTTATGAGCACTGGTACCTGCAAATATGGATTTGATTGCAAGTACCACCACCCAAAAGAAAGAATTGCTCAATCATTGATGAATCCACTTGGCCTTCCTGTCAGACCTGGGCATGCAATATGTTCTTATTATAGACTCTCTGGAATATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCAATTTTGGCAATTCCTCAAAGCTATGGCTTGACCTCCTCACACGCTTTCTCTGTACCTGATACATCTCTGATTAGTAGTTCAAGAGTTTTATCAACCGTCCAACCACCTGAGACATCTATATCTAAATTATCAAATGACAAGGTTCAACACTCTGATACAAAAGCTACCGAAGATTCATCGAAACAAGTTGATTCTAATACACCAGAATCCTTCCCAGCAACCTCAGAGTCCTAA 1245 0.4257 MSENSHPLKNAVSNNTGDNIEGEAVLRLNINDSQDRDAAAQSIPFPERPGEPDCLYYLRTGMCGYGSACRYNHPANVSLGIHYGEELPERVGQPDCEYFVKTGTCKYGSTCKYHHPRDRRGAAPVSFNSLGLPMRQEERSCPYYMRTGSCKFGVACKFHHPQIGASPVAGSPTSTILPTSGLPYVGGISAWQLPRMSYLSGQGIQSYVPPFLSSPQGIIPAQNWNTYMGSMSGAITTGFLGSNFVYDTMNLGEPLLGGQVISPALPERPGQPECKYFMSTGTCKYGFDCKYHHPKERIAQSLMNPLGLPVRPGHAICSYYRLSGICKFGPTCKFDHPILAIPQSYGLTSSHAFSVPDTSLISSSRVLSTVQPPETSISKLSNDKVQHSDTKATEDSSKQVDSNTPESFPATSES 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0185 414 SUPERFAMILY CCCH zinc finger 313 338 IPR036855 GO:0046872
Lal22g0185 414 PANTHER PROTEIN PHOSPHATASE RELATED 6 402 - -
Lal22g0185 414 Gene3D - 266 341 - -
Lal22g0185 414 SUPERFAMILY CCCH zinc finger 134 162 IPR036855 GO:0046872
Lal22g0185 414 Gene3D - 45 118 - -
Lal22g0185 414 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Lal22g0185 414 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Lal22g0185 414 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Lal22g0185 414 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
Lal22g0185 414 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 6 402 - -
Lal22g0185 414 Gene3D - 119 167 - -
Lal22g0185 414 SUPERFAMILY CCCH zinc finger 53 75 IPR036855 GO:0046872
Lal22g0185 414 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Lal22g0185 414 SMART c3hfinal6 268 295 IPR000571 GO:0046872
Lal22g0185 414 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Lal22g0185 414 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Lal22g0185 414 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Lal22g0185 414 MobiDBLite consensus disorder prediction 371 414 - -
Lal22g0185 414 SUPERFAMILY CCCH zinc finger 272 297 IPR036855 GO:0046872
Lal22g0185 414 ProSiteProfiles Zinc finger C3H1-type profile. 135 163 IPR000571 GO:0046872
Lal22g0185 414 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Lal22g0185 414 MobiDBLite consensus disorder prediction 397 414 - -
Lal22g0185 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 74 IPR000571 GO:0046872
Lal22g0185 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Lal22g0185 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 162 IPR000571 GO:0046872
Lal22g0185 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 313 337 IPR000571 GO:0046872
Lal22g0185 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 295 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0185 Lal-Chr22 1166850 1171295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0185 1 402 C3H Transcription Factor Family AT1G04990 45.972 5.50e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal22g0185 zf-CCCH 2.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0185 - - vra:106765262 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1420 18 16325588 16329479 Lal22g0185 22 1166850 1171295 LSH
Lal22g0185 22 1166850 1171295 Lal6g0196 6 1350908 1354969 LSH