Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0183 ATGTTTGATATGCAAGTATCAGAAATCCAACAACTCCAACTTGAAGTAAAACACCAGAAACAACATAATAATCATAATCAAGACACACCCATGTGCCAGAAGAAGATCCAAATTCAAGATGAGAAGAAAGTAATTGTGGAAGGAGATGATTTCCTCGTTCCACCCCTCAATTTTGCAATGGTAGATAATGGCATTTTTCGTTCAGGTTTCCCTAAACCAGACAACTTTTCCTTCCTCCAAACCCTTCGTCTCCGCTCTATCATATATCTGTGTCCTGAACCATACCCAGAGACCAACTTGGAGTTCCTAAACTCTAACAAGATCAAGCTTTATCAATTTGGGATTGAGGGTCATAAGGAGCCTTTTGTAAACATTCCAGAGGACACAATCCGTGAAGCACTAAAAGTTCTCCTTGATGTCAGGAACCACCCTCTCATTATTCACTGTAAACGAGGAAAGCACCGAACGGGTTGTTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCAGTGTTTGATGAGTACCAGCGGTTTGCAGCTGCCAAAGCAAGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCCAGCATCAAGCATTTGCCTATAGCATTTTCATGTTTGAAGAGATAA 645 0.4 MFDMQVSEIQQLQLEVKHQKQHNNHNQDTPMCQKKIQIQDEKKVIVEGDDFLVPPLNFAMVDNGIFRSGFPKPDNFSFLQTLRLRSIIYLCPEPYPETNLEFLNSNKIKLYQFGIEGHKEPFVNIPEDTIREALKVLLDVRNHPLIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSIKHLPIAFSCLKR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0183 214 PRINTS Plant and fungal dual specificity phosphatase signature 52 69 IPR020428 GO:0016791
Lal22g0183 214 PRINTS Plant and fungal dual specificity phosphatase signature 89 102 IPR020428 GO:0016791
Lal22g0183 214 PRINTS Plant and fungal dual specificity phosphatase signature 108 122 IPR020428 GO:0016791
Lal22g0183 214 PRINTS Plant and fungal dual specificity phosphatase signature 125 139 IPR020428 GO:0016791
Lal22g0183 214 ProSitePatterns Tyrosine specific protein phosphatases active site. 147 157 IPR016130 GO:0016311|GO:0016791
Lal22g0183 214 Gene3D Protein tyrosine phosphatase superfamily 51 201 IPR029021 -
Lal22g0183 214 ProSiteProfiles Dual specificity protein phosphatase domain profile. 57 211 IPR020422 GO:0006470|GO:0008138
Lal22g0183 214 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 199 IPR029021 -
Lal22g0183 214 PANTHER TYROSINE-PROTEIN PHOSPHATASE 18 213 - -
Lal22g0183 214 Pfam Tyrosine phosphatase family 52 204 IPR004861 -
Lal22g0183 214 CDD PFA-DSP_Siw14 52 198 - -
Lal22g0183 214 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 18 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0183 Lal-Chr22 1139249 1143259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0183 48 214 Protein tyrosine phosphatase (PTP) family AT4G03960 75.449 1.99e-97 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0183 K18045 - gmx:100814279 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1433 18 16408076 16409667 Lal22g0183 22 1139249 1143259 LSH
Lal22g0183 22 1139249 1143259 Lal6g0195 6 1331755 1336730 LSH