Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0169 ATGGCTGGAACCCTAACACCGAAGAAGTCTCTACTATTGCTGACGAGCTCACGGTCGGAGACGCAAACAATTAATGGTTCACACAAATTTGTGATCCAAGGGTACTCGATAGCAAAGGGGATGGGAGTTGGGAAGCACATTGTGAGTGGTTCGTTTACTGTCGGAGGGTACTGTTGGGCGATCTACTTCTACCCTGATGGAAGAAACCCTAAGGAAAACTCCGCCTATGTCTCTGTCTTCATTGTCCTCGCCAGCAACAGCACCGATGTGAGGGCGCTGTTTGAGCTCATTCTCGTTGATCAGAGTGGCAAAGGGAAGCATAAGGTTCGCAGTCATTTTGGTCGACCACTCGAGAATGTTCCTCATACTCTCAAGTGTAAGGGTAGCATGTGGGGGTACAAGAGGTTTTTCAGACGGTCTCTGCTTGAAAGCTCTGATTTCCTCAAGAATGATTGCTTGAAAATCAACTGTACAGTCGGAGTTGTGGTTTCAACAATTGATAGTCCACAACTTCACTCTATTAATGTCCCAGAATCTGACATTGGATCACACTTTGGTGCACTACTGGAAAATATGGAAGGTTCAGATGTTATTTTCAATGTCGCAGGGGAAAGGTTCCCTGCTCATAAATTGGTGTTGACTGCTAGATCCCCAGAATTTCGATCTAAATTTTTTGATGGTTTAAATGTCGATAATCAAGAGATTATCGTTACAGATTTAGACACTAAGGTTTTCAAGGCCATGCTGCACTTTATCTACAGGGATACCCTTATGGAAGAGGTGGATGAGGTTTCATCAACCACATCTAGTGATTTTCCCATTTTGGAGACATTGACAGCAAAGTTGTTAGCTGCAGCAGATAAGTATGGCTTGGAGAGACTTAAACTGATGTGTGAGTCTCGTCTTTGCAAGGATATATGTGTGAACTCTGTAGCCAACATTTTAACCTTGGCTGACAATTGCCATGCCACAGAGTTAAAAGCTGTTTGCCTAAAGTTTGCTGCTCAAAATCTAGCAGAATCAGATTGGTCTGACCAGTTGAATCATAAAAATACCGAGAACTGGTCCCCCAACCAACCCAGTCTACCCATTAAAACTGGATTTTCAAAAGCTGCTGTCATGAGGTCTGAAGGATTTGAGTCAATGAAAGAAAAGTGCCCAAGGCTACAATCAGAGATCTTGAAGACGATTGTGGGATGTGAGGTTGATAGCTGCAGTGCAGGGGAAAAATCTCAGAGTGTGTGGGCTCAACTTTCAGATGGTGGCGACGTAAATAGCAGGAGGGTGAGGCAGAGAATATGA 1302 0.4401 MAGTLTPKKSLLLLTSSRSETQTINGSHKFVIQGYSIAKGMGVGKHIVSGSFTVGGYCWAIYFYPDGRNPKENSAYVSVFIVLASNSTDVRALFELILVDQSGKGKHKVRSHFGRPLENVPHTLKCKGSMWGYKRFFRRSLLESSDFLKNDCLKINCTVGVVVSTIDSPQLHSINVPESDIGSHFGALLENMEGSDVIFNVAGERFPAHKLVLTARSPEFRSKFFDGLNVDNQEIIVTDLDTKVFKAMLHFIYRDTLMEEVDEVSSTTSSDFPILETLTAKLLAAADKYGLERLKLMCESRLCKDICVNSVANILTLADNCHATELKAVCLKFAAQNLAESDWSDQLNHKNTENWSPNQPSLPIKTGFSKAAVMRSEGFESMKEKCPRLQSEILKTIVGCEVDSCSAGEKSQSVWAQLSDGGDVNSRRVRQRI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0169 433 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 13 349 IPR045005 GO:0016567
Lal22g0169 433 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 371 410 IPR045005 GO:0016567
Lal22g0169 433 SMART math_3 30 142 IPR002083 GO:0005515
Lal22g0169 433 CDD BTB_POZ_BPM_plant 181 303 - -
Lal22g0169 433 ProSiteProfiles MATH/TRAF domain profile. 25 159 IPR002083 GO:0005515
Lal22g0169 433 Pfam BTB/POZ domain 187 304 IPR000210 GO:0005515
Lal22g0169 433 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 371 410 - -
Lal22g0169 433 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 13 349 - -
Lal22g0169 433 SUPERFAMILY TRAF domain-like 23 165 - -
Lal22g0169 433 CDD MATH 26 159 IPR002083 GO:0005515
Lal22g0169 433 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 24 162 IPR008974 GO:0005515
Lal22g0169 433 Gene3D Potassium Channel Kv1.1; Chain A 163 337 IPR011333 -
Lal22g0169 433 ProSiteProfiles BTB domain profile. 195 261 IPR000210 GO:0005515
Lal22g0169 433 SUPERFAMILY POZ domain 171 306 IPR011333 -
Lal22g0169 433 SMART BTB_4 195 306 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0169 Lal-Chr22 1045768 1049666 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal22g0169 BTB 2.8e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0169 K10523 - gmx:100806769 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0169 22 1045768 1049666 Lal22g0169 22 1045768 1049666 ECH