Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0159 ATGACCCGTTCATCATTATCATCCAAATTCAACGGACGAGATGCAGACATGGATTTGTTTGAGACAAATGGTAATGGGAATGGTAATGAGGCTGAGGACTCTCTTCCTCCACCACCTCCTGTTGTGCCACCAGATGTCGTGCCAGTTAAAGCTGACCAGCAGCCACCACCACCCGAGCCTGCTAAGAAAAAGCCTTCCAGGGTTCCAATGGCCAGGCGTGGTACTGGATCAAAGGGAACTAAGCTGCAACTTCTCACTAACCACTTCAAAGTGAATGTCAACAACAATGATGGGCATTTCTTCCAGTATAGTGTTTCTCTTGCCTATGAAGATGGACGCCCTGTTGAAGGCAAGGGCGTTGGAAGGAAAGTTATTGACAAGGTGCAGGAAACTTATGATTCCGAGTTAAATGGAAAGGACTTCGCATACGATGGTGAGAAAACTTTGTTTACCATAGGTTCTCTCGCTCGAAACAAACTTGAGTTTCAAGTTGTGCTGGAGGATGTCACCTCAAACAGAAACAATGGAAACTGCAGCCCTGAAAATGGAAGTCCAAATGAGAGTGACAAGAAGAGGATGCGACGCCCCTATCGTGCCAAGACATTTAAAGTTGAGCTCAGCTTTGCCTCGAAAATTCCAATGCAGGCTATCTCCAATGCATTGCGTGGGCAGGAATCTGAAAATTTCCAAGAAGCCATAAGGGTGCTTGATATCATATTGAGGCAACATGCTTCTAAGCAAGGCTGCCTACTTGTGCGGCAATCATATTTTCACAATGATCCCAAGAATTTTGCGGATGTCGGAGGCGGTGTCCTTGGATGCAGAGGTTTCCATTCTAGTTTCAGAACTACTCAGAGTGGCCTGTCTCTGAATATAGATGTCTCTACAACAATGATAATTACTCCCGGGCCTGTGGTGGACTTCTTAATTGCCAACCAAAATGTGAGAGATCCATTTTCACTTGACTGGACAAAGGCAAAAAGGACTCTGAAAAATCTTAGGATTAAAACTAGCCCATCCAATCAGGAGTTCAAGATTACTGGTCTCAGTGAACTCCCCTGCAAAGAGCAGATGTTTACACTGAAGGTCAAAGGGGGTGCTGATGATGCTACTGAGGAAGTCACAGTTTATGACTATTTTGTTAACCGTCGTAACATTCAACTGCGGTACTCAGCTGATCTCCCTTGTATTAATGTTGGCAAGCCCAAGCGACCAACTTACTTCCCCCTTGAGCTTTGCTCCTTAGTGTCATTGCAACGCTATACAAAGGCACTTTCCACTCTTCAAAGGGCTTCTTTAGTGGAGAAGTCCAGGCAGAAGCCACAAGAGCGTATGAGGGTTTTGTCTGATGCTCTGAAAATAAGCAACTATGGTGCTGAACCCATGCTACGCAATTGTGGTATTCAGATAAACCCTAGCTTTACTCAAGTGGATGGTCGTGTTTTGCAAGCTCCAAGGTTGAAGTTTGGCAATGGTGAGGATTTCAATCCAAGGAATGGGAGATGGAATTTTAATAATAAGAAAATTGTGGATCCAGTGAAGATAGAAAGATGGGCTGTGGTCAATTTTTCAGCACGCTGCAATGTTCAAGCGCTTGTGCGGGACCTAATTAAATGTGGAAATATGAAAGGAATTATGGTCGAAGACCCTTTTGATGTATTTGAAGAAAACGCTCAGTTTAGGCGTGCCCCACCTGTGGTCAGAGTGGAAAAGATGTTTGAGCATATGATGTCGAAACTTCCCGGGGCACCCAAGTTTCTTCTTTGTTTGCTACCTGAGCGGAAAAATTCTGATCTATATGGACCATGGAAGAAGAAGAATCTTGCTGACTTTGGTATTGTTACTCAGTGCATTGCACCTACCAAGGTCAATGATCAGTATCTGACTAATGTTTTGCTGAAAATCAATGCTAAGCTTGGTGGGATGAATTCACTGCTTGGTGTGGAGCATTCTCCTTCCATTCCTATCATTTCGAAGGCTCCCACCCTCATTCTTGGTATGGATGTCTCACATGGTTCTCCAGGGCAATCTGATATTCCTTCAATTGCAGCGGTGGTTAGCTCTCGACACTGGCCTCTGATATCAAAATATAGGGCTTGTGTGCGTACTCAGTCTCCTAAGGTTGAGATGATTGATAATTTGTTCAAGAAAGTATCTGACAAGGAAGATGAAGGCATTATCAGGGAACTACTGATTGACTTCTATGCGAGTTCTGGGAAGAGGAAGCCGGACAATATTATCATATTTAGGGATGGTGTAAGTGAATCTCAATTTAATCAAGTTTTGAACCAGGAACTTGATCAAATCATTCAGGCCTGCAAATTTCTTGATGAAAACTGGGACCCCAAGTTTTTGGTCATTGTTGCTCAGAAGAACCACCACACAAAGTTTTTCCAGCCTGGATCACCTGATAATGTTCCTCCTGGCACTGTTATTGATAACAAAGTTTGCCACCCTCGCAACTATGATTTCTACTTGTGTGCTCATGCTGGAATGATAGGCACCACTAGGCCTACACACTATCATGTTCTGTTAGATGAGATTGGCTTCTCCACTGATGATCTACAGGAACTTGTTCATTCTTTGTCCTATGTGTACCAGAGGAGCACAACTGCCATTTCTGTTGTTGCTCCAATATGCTATGCTCACCTTGCGGCAACTCAAATGGGACAGTTTATGAAGTTCGAGGACAAATCTGAGACATCATCAAGTCATGGTGGTCTGACTGCTGCTGGAGCAGTTCCTGTTCCTCAGTTGCCCAAACTGGAGGAGAAGGTCTGCAACTCTATGTTCTTTTGTTGA 2802 0.4404 MTRSSLSSKFNGRDADMDLFETNGNGNGNEAEDSLPPPPPVVPPDVVPVKADQQPPPPEPAKKKPSRVPMARRGTGSKGTKLQLLTNHFKVNVNNNDGHFFQYSVSLAYEDGRPVEGKGVGRKVIDKVQETYDSELNGKDFAYDGEKTLFTIGSLARNKLEFQVVLEDVTSNRNNGNCSPENGSPNESDKKRMRRPYRAKTFKVELSFASKIPMQAISNALRGQESENFQEAIRVLDIILRQHASKQGCLLVRQSYFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLIANQNVRDPFSLDWTKAKRTLKNLRIKTSPSNQEFKITGLSELPCKEQMFTLKVKGGADDATEEVTVYDYFVNRRNIQLRYSADLPCINVGKPKRPTYFPLELCSLVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLSDALKISNYGAEPMLRNCGIQINPSFTQVDGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVDPVKIERWAVVNFSARCNVQALVRDLIKCGNMKGIMVEDPFDVFEENAQFRRAPPVVRVEKMFEHMMSKLPGAPKFLLCLLPERKNSDLYGPWKKKNLADFGIVTQCIAPTKVNDQYLTNVLLKINAKLGGMNSLLGVEHSPSIPIISKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRHWPLISKYRACVRTQSPKVEMIDNLFKKVSDKEDEGIIRELLIDFYASSGKRKPDNIIIFRDGVSESQFNQVLNQELDQIIQACKFLDENWDPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVIDNKVCHPRNYDFYLCAHAGMIGTTRPTHYHVLLDEIGFSTDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEDKSETSSSHGGLTAAGAVPVPQLPKLEEKVCNSMFFC 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0159 933 Pfam Argonaute linker 1 domain 252 300 IPR014811 -
Lal22g0159 933 SUPERFAMILY Ribonuclease H-like 578 892 IPR012337 -
Lal22g0159 933 Gene3D - 481 647 - -
Lal22g0159 933 Pfam Argonaute linker 2 domain 443 489 IPR032472 -
Lal22g0159 933 MobiDBLite consensus disorder prediction 1 79 - -
Lal22g0159 933 ProSiteProfiles Piwi domain profile. 586 894 IPR003165 GO:0003676
Lal22g0159 933 MobiDBLite consensus disorder prediction 171 194 - -
Lal22g0159 933 SMART Piwi_a_2 586 894 IPR003165 GO:0003676
Lal22g0159 933 CDD Piwi_ago-like 461 888 IPR045246 -
Lal22g0159 933 Pfam N-terminal domain of argonaute 81 240 IPR032474 -
Lal22g0159 933 SMART DUF1785_2 250 302 IPR014811 -
Lal22g0159 933 Coils Coil 759 779 - -
Lal22g0159 933 Gene3D paz domain 296 421 - -
Lal22g0159 933 Gene3D - 653 933 IPR036397 GO:0003676
Lal22g0159 933 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 14 932 - -
Lal22g0159 933 CDD PAZ_argonaute_like 302 416 - -
Lal22g0159 933 MobiDBLite consensus disorder prediction 33 64 - -
Lal22g0159 933 Pfam Piwi domain 587 894 IPR003165 GO:0003676
Lal22g0159 933 SUPERFAMILY PAZ domain 297 457 IPR036085 GO:0005515
Lal22g0159 933 Pfam PAZ domain 306 433 IPR003100 GO:0005515
Lal22g0159 933 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 14 932 - -
Lal22g0159 933 ProSiteProfiles PAZ domain profile. 327 417 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0159 Lal-Chr22 987658 996164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0159 72 933 Eukaryotic Initiation Factors Gene Family AT5G43810 35.619 1.03e-164 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0159 K11593 - gmx:100779439 1576.99