Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0156 ATGGCCAAGAAGCGAAAGCTCCGATCTTCCGACCCCGAACCCACCAAGCAGCCCGATTCCGAGGTTTTACAAGAACAACAGCAATCCCTAGAAGGATCCCAGGACCACATGTCCATCGATCAACAACAACAACAACCAATTGAAGAGTACCATCACATCGAAGAAGAAGAAGAAGAACAACAACAACAACAACAAGAGGAAGAGGAAGATGTCGAAGAAGGAAATGATGATGATGTTGATGAAGCAGCACCAGAAAACGAAACCCTAGAAGACCAGAATCAGGAGCAGGATGCTGAACCTTCCAACAACGACGCTGCTACACAATCTGAATCAGTTAAAGTCGAAGTGAACGGTGATGGAAACAACGAAGAGGAGGAAGATCTCGAATTGGAAGAGGAGCCTGTGGAGAAGCTTCTAGAACCTTTTACAAAGGAGCAGCTACACGCTCTCGTCAAACAAGCTGTTGAGAAGTTCCCTGATTTCGCCGAGAACATTCGCCAGCTGGCAGATGTGGACCCCGCTCACCGCAAAATCTTCATCCACGGCCTAGGTTGGGATGCCACAGCTGAAACCCTTACCTCACTTTTCTCCAAGTATGGTGAAATCGAAGACTGCAAGGCTGTTACTGATAAACTCTCTGGGAAATCAAAAGGTTATGCCTTTATCCTCTTCAAGCATCGTAGTGGAGCGCGAAGAGCGCTGAAGCAGCCACAGAAGAAGATAGGTAACAGAACCACTTCATGTCAATTGGCCTCTGCTGGACCTGTTCCTGCCCCTCCTCCTGTTGCCCCTGCGGTTTCAGAGTATACACAAAGGAAGATTTTTGTGAGCAATGTGAGTGCTGACATTGATCCCCAGAAGCTGCTTGAGTTTTTCAGGCAGTTTGGGGAGGTGGAAGATGGTCCTCTTGGTCTTGATAAGCAGACTGGGAAGCCTAGAGGGTTTGCGCTTTTTGTGTATAAATCGGTGGATAGTGCGAAGAAGGCTCTGGAAGATCCCCATAAGCAGTTTGAGGGGCATGTTTTGTATTGCCAGAAAGCTGTTGATGGCCCCAAGGGAAAACAAGGATATCATCAGCAACCACATCACCAACATCATCAGCACCAGCACCATTCCCACCATCATCACCAGCCTCACTTTCAACGGAAGGATAAGAACAAATATTCTTCTAGTGGTGTCCCTGCACATGGAGGCGGGCACTTGATGGCACCATCAGGTCCTTCTCTGGGAGGTTACAATCAAGGAGTGCCTGCAGCTCAGGGATTGAATCCAGTGCTTGGTCAGGCGATATCAGCTTTGCTTACAACCCAAGGAGCCGGGTTGGGACTTGGGAACTTGCTTGGAGGTCTTGGCGGTGCACATGTGAATCACTCTGTTCCACCTGCTGGGTATGGTAATCAGCCTGCTATGAACTATGGGAACCAGCTAGGGATGCAGCAGGGATACCAGAATCCTCAAATGGGGCAGAGCAGTGGTGTTAGGCCTCATCCAGGTTCTGGCGCTCCGTACATGGGTCATTAG 1521 0.4918 MAKKRKLRSSDPEPTKQPDSEVLQEQQQSLEGSQDHMSIDQQQQQPIEEYHHIEEEEEEQQQQQQEEEEDVEEGNDDDVDEAAPENETLEDQNQEQDAEPSNNDAATQSESVKVEVNGDGNNEEEEDLELEEEPVEKLLEPFTKEQLHALVKQAVEKFPDFAENIRQLADVDPAHRKIFIHGLGWDATAETLTSLFSKYGEIEDCKAVTDKLSGKSKGYAFILFKHRSGARRALKQPQKKIGNRTTSCQLASAGPVPAPPPVAPAVSEYTQRKIFVSNVSADIDPQKLLEFFRQFGEVEDGPLGLDKQTGKPRGFALFVYKSVDSAKKALEDPHKQFEGHVLYCQKAVDGPKGKQGYHQQPHHQHHQHQHHSHHHHQPHFQRKDKNKYSSSGVPAHGGGHLMAPSGPSLGGYNQGVPAAQGLNPVLGQAISALLTTQGAGLGLGNLLGGLGGAHVNHSVPPAGYGNQPAMNYGNQLGMQQGYQNPQMGQSSGVRPHPGSGAPYMGH 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0156 506 MobiDBLite consensus disorder prediction 1 131 - -
Lal22g0156 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Lal22g0156 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 245 IPR000504 GO:0003723
Lal22g0156 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 342 IPR000504 GO:0003723
Lal22g0156 506 SUPERFAMILY RNA-binding domain, RBD 166 253 IPR035979 GO:0003676
Lal22g0156 506 MobiDBLite consensus disorder prediction 358 382 - -
Lal22g0156 506 MobiDBLite consensus disorder prediction 1 15 - -
Lal22g0156 506 Gene3D - 168 254 IPR012677 -
Lal22g0156 506 Gene3D - 263 389 IPR012677 -
Lal22g0156 506 SUPERFAMILY RNA-binding domain, RBD 256 368 IPR035979 GO:0003676
Lal22g0156 506 MobiDBLite consensus disorder prediction 95 116 - -
Lal22g0156 506 MobiDBLite consensus disorder prediction 477 493 - -
Lal22g0156 506 Coils Coil 47 77 - -
Lal22g0156 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 355 IPR000504 GO:0003723
Lal22g0156 506 MobiDBLite consensus disorder prediction 52 94 - -
Lal22g0156 506 CDD RRM_RBM24_RBM38_like 272 347 - -
Lal22g0156 506 SMART rrm1_1 273 345 IPR000504 GO:0003723
Lal22g0156 506 SMART rrm1_1 177 249 IPR000504 GO:0003723
Lal22g0156 506 MobiDBLite consensus disorder prediction 477 506 - -
Lal22g0156 506 CDD RRM_RBM24_RBM38_like 176 251 - -
Lal22g0156 506 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 493 - -
Lal22g0156 506 MobiDBLite consensus disorder prediction 348 408 - -
Lal22g0156 506 MobiDBLite consensus disorder prediction 16 46 - -
Lal22g0156 506 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0156 Lal-Chr22 967588 969930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0156 251 359 C2H2 Transcription Factor Family AT2G19380 29.358 2.97e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0156 K12741 - gmx:100792637 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1468 18 16651433 16655527 Lal22g0156 22 967588 969930 LSH
Lal22g0156 22 967588 969930 Lal6g0162 6 1153064 1154521 LSH