Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0149 ATGAGAGATTCAGATTGTGAAGTTGTTGATAATAAACCAAAGCCAAAGGGTGATGAAGAAGATAGTGGTAAAAAAGCACTACCCAGGCAGAATTGTGAATTTTGTGGGAAGAAGTTTAAGTCAGGGAAAGCATTAGGTGGTCACAAAAAGATCCATTTTGAAGCTCATAGGAATTTCAAATCAAAGAAAGCCACCATCACTACCAATAATAAGGCTAATTGGAATGGCAACAAGTTCTCTTCTTTGATGGCTCCTAATAGGGAACTGAGACTCTCTTGTTATCTATGCAATAAGGATTTTCCATCTGAAAAGTCCTTGTGTGGGCATATGAGGACTCACCCTAATAGAGTTTGGAGGGGTGTTCACCCTCCTCCTACTGGTACTACACAAGCTTCTCCAACTTGTTTCTCCAACTTTGATTCTAAGGTTAAGATTAATAATGATAACTATGTTAGTGCAATAGCTGCTGCAACAGCTTCTTCTGATGCATCAAGATGTTTAACAATAAGCTGGAAAAAGACCAATAAGCGAAGTGGGTCAAGTGTTTTTGATGCCAAGGTTGTTGCAGCGGCTAAAACACTTGTGTGCATGAGTAGGTCATGTGAAGCAATAGAAGGTATGATCACTCAACTGTCAACATCTACTAGCTATGCTGCAAGTTCATGCTTAGTTAATTTGATCGCCTCATAA 690 0.3928 MRDSDCEVVDNKPKPKGDEEDSGKKALPRQNCEFCGKKFKSGKALGGHKKIHFEAHRNFKSKKATITTNNKANWNGNKFSSLMAPNRELRLSCYLCNKDFPSEKSLCGHMRTHPNRVWRGVHPPPTGTTQASPTCFSNFDSKVKINNDNYVSAIAAATASSDASRCLTISWKKTNKRSGSSVFDAKVVAAAKTLVCMSRSCEAIEGMITQLSTSTSYAASSCLVNLIAS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0149 229 SUPERFAMILY beta-beta-alpha zinc fingers 31 113 IPR036236 -
Lal22g0149 229 SMART c2h2final6 30 52 IPR013087 -
Lal22g0149 229 SMART c2h2final6 91 113 IPR013087 -
Lal22g0149 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 52 IPR013087 -
Lal22g0149 229 MobiDBLite consensus disorder prediction 1 26 - -
Lal22g0149 229 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 18 177 - -
Lal22g0149 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Lal22g0149 229 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Lal22g0149 229 Pfam C2H2-type zinc finger 93 114 - -
Lal22g0149 229 Pfam C2H2-type zinc finger 31 52 - -
Lal22g0149 229 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 18 177 IPR044653 GO:0003700
Lal22g0149 229 Gene3D Classic Zinc Finger 29 113 - -
Lal22g0149 229 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0149 Lal-Chr22 929998 930687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0149 32 125 C2H2 Transcription Factor Family AT2G26940 36.893 4.72e-14 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal22g0149 zf-C2H2_6 5.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0149 - - lang:109356346 285.419