Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal22g0149 | ATGAGAGATTCAGATTGTGAAGTTGTTGATAATAAACCAAAGCCAAAGGGTGATGAAGAAGATAGTGGTAAAAAAGCACTACCCAGGCAGAATTGTGAATTTTGTGGGAAGAAGTTTAAGTCAGGGAAAGCATTAGGTGGTCACAAAAAGATCCATTTTGAAGCTCATAGGAATTTCAAATCAAAGAAAGCCACCATCACTACCAATAATAAGGCTAATTGGAATGGCAACAAGTTCTCTTCTTTGATGGCTCCTAATAGGGAACTGAGACTCTCTTGTTATCTATGCAATAAGGATTTTCCATCTGAAAAGTCCTTGTGTGGGCATATGAGGACTCACCCTAATAGAGTTTGGAGGGGTGTTCACCCTCCTCCTACTGGTACTACACAAGCTTCTCCAACTTGTTTCTCCAACTTTGATTCTAAGGTTAAGATTAATAATGATAACTATGTTAGTGCAATAGCTGCTGCAACAGCTTCTTCTGATGCATCAAGATGTTTAACAATAAGCTGGAAAAAGACCAATAAGCGAAGTGGGTCAAGTGTTTTTGATGCCAAGGTTGTTGCAGCGGCTAAAACACTTGTGTGCATGAGTAGGTCATGTGAAGCAATAGAAGGTATGATCACTCAACTGTCAACATCTACTAGCTATGCTGCAAGTTCATGCTTAGTTAATTTGATCGCCTCATAA | 690 | 0.3928 | MRDSDCEVVDNKPKPKGDEEDSGKKALPRQNCEFCGKKFKSGKALGGHKKIHFEAHRNFKSKKATITTNNKANWNGNKFSSLMAPNRELRLSCYLCNKDFPSEKSLCGHMRTHPNRVWRGVHPPPTGTTQASPTCFSNFDSKVKINNDNYVSAIAAATASSDASRCLTISWKKTNKRSGSSVFDAKVVAAAKTLVCMSRSCEAIEGMITQLSTSTSYAASSCLVNLIAS | 229 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal22g0149 | 229 | SUPERFAMILY | beta-beta-alpha zinc fingers | 31 | 113 | IPR036236 | - | |
Lal22g0149 | 229 | SMART | c2h2final6 | 30 | 52 | IPR013087 | - | |
Lal22g0149 | 229 | SMART | c2h2final6 | 91 | 113 | IPR013087 | - | |
Lal22g0149 | 229 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 30 | 52 | IPR013087 | - | |
Lal22g0149 | 229 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lal22g0149 | 229 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY | 18 | 177 | - | - | |
Lal22g0149 | 229 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 91 | 113 | IPR013087 | - | |
Lal22g0149 | 229 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 93 | 113 | IPR013087 | - | |
Lal22g0149 | 229 | Pfam | C2H2-type zinc finger | 93 | 114 | - | - | |
Lal22g0149 | 229 | Pfam | C2H2-type zinc finger | 31 | 52 | - | - | |
Lal22g0149 | 229 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 18 | 177 | IPR044653 | GO:0003700 | |
Lal22g0149 | 229 | Gene3D | Classic Zinc Finger | 29 | 113 | - | - | |
Lal22g0149 | 229 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 32 | 52 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal22g0149 | Lal-Chr22 | 929998 | 930687 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal22g0149 | 32 | 125 | C2H2 Transcription Factor Family | AT2G26940 | 36.893 | 4.72e-14 | 68.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lal22g0149 | zf-C2H2_6 | 5.4e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal22g0149 | - | - | lang:109356346 | 285.419 |