Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0147 ATGATGAATAAGATTCAAGTCCAAGAAGAACTAGAGAGGATTGAAGAACAATGTACAAAATGGGAAGAGGTAGAGAAGTGTTATGCGAGTATATTCAAGAAAATTGAGAACATAGGTAAAAGTAGTGTAGCAGAGTTTGAGAAAAAGAACAGTGAATTAGAAAGTGAAAATTGGAAGCTGAGAGCATTGAAGAGAAAATGGGGTGATGAAATTTATGCAAAGGCTAAGCTTAGGACAAAACTCAGAAAGTGGGAACATAAAAGGGATGAAGTTGAGGAGATCATAAATGTTTTGGAATATCAGAAGAAGAATGCTATCAATGCAACTACCGATACCCAAAAAGTAGAAATGGCTGCTACCTTCTCAGATCTACACACTGAGTCAGGTCTCAAATCCCTTGATCAATTCCTATCTGGCAAGACCTATATTTCTGGGGATGAATTGACAAAGGATGACATCAAAGTGTATGCTTCTGTTTTGGAGAAGCCATCAGAATCTTTTCCCCATGCTGCTAAGTGGTACGAGGTTGTCTCTTCTCATCTTGCTCCAAGCTTCCCTGGCACTGCTCAAGGGGTGAAATTCAGTGGAAAATCTGCCCCAGCTGAAGCTGCACCGGCCAAATCGGATGCTCCTGCAGAAGATGACGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGACAAGAAGGCAGCTGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAAAAGAAAGAAAGTGGTAAGTCTTCTGTTCTGCTTGATGTGAAGCCTTGGGATGATGAGACAGACATGAAAAAGCTAGAAGAGACTGTTCGCAGCATTGAGCTGCCTGGTCTACTGTGGGGAGCATCGAAACTGGTTCCTGTTGGATATGGGATAAAGAAGCTGCAGATAATGATGACAATTGTTGATGACCTTGTATCTGTGGACACTCTCATTGAAGAACGTCTGACAGTTGAGCCGTGCAACGAGTACATCCAAAGCTGTGACATTGTTGCCTTCAACAAAATTTAA 1017 0.4208 MMNKIQVQEELERIEEQCTKWEEVEKCYASIFKKIENIGKSSVAEFEKKNSELESENWKLRALKRKWGDEIYAKAKLRTKLRKWEHKRDEVEEIINVLEYQKKNAINATTDTQKVEMAATFSDLHTESGLKSLDQFLSGKTYISGDELTKDDIKVYASVLEKPSESFPHAAKWYEVVSSHLAPSFPGTAQGVKFSGKSAPAEAAPAKSDAPAEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEETVRSIELPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLIEERLTVEPCNEYIQSCDIVAFNKI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0147 338 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 214 222 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lal22g0147 338 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 117 338 - -
Lal22g0147 338 SUPERFAMILY GST C-terminal domain-like 74 181 IPR036282 -
Lal22g0147 338 SMART EF1_GNE_2 249 338 IPR014038 GO:0003746|GO:0006414
Lal22g0147 338 MobiDBLite consensus disorder prediction 224 246 - -
Lal22g0147 338 Coils Coil 4 24 - -
Lal22g0147 338 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 117 338 - -
Lal22g0147 338 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 327 338 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lal22g0147 338 SUPERFAMILY eEF-1beta-like 246 338 IPR036219 -
Lal22g0147 338 Pfam EF-1 guanine nucleotide exchange domain 251 338 IPR014038 GO:0003746|GO:0006414
Lal22g0147 338 Coils Coil 74 101 - -
Lal22g0147 338 Gene3D - 74 188 - -
Lal22g0147 338 Gene3D - 242 338 IPR014717 -
Lal22g0147 338 MobiDBLite consensus disorder prediction 191 246 - -
Lal22g0147 338 Coils Coil 43 66 - -
Lal22g0147 338 CDD EF1B 247 338 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0147 Lal-Chr22 921451 927850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0147 117 338 Eukaryotic Initiation Factors Gene Family AT5G12110 71.491 3.30e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0147 K03232 - gmx:100500082 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1479 18 16726822 16728951 Lal22g0147 22 921451 927850 LSH
Lal3g1179 3 17089870 17093446 Lal22g0147 22 921451 927850 PCT
Lal22g0147 22 921451 927850 Lal3g1179 3 17089870 17093446 PCT