Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0146 ATGTCAAGTGGAGCTACTCACTGGTGTTACACATGCAGGCAGACAATTGTGCTTGAAGGCAGAGAGGTCATTTGCCCCCACTGTGATGGAGGATTTGTACAAGAACTCAATGAGTTGCAAGGAACTGCACCCCAATTTACCTTTCCTTCACAATTGGGAGAGCATCATCAAATGCCTGACCTTATTGATGCTATACGGGCTTCTATGGGGCGGAGAGGCTCTGATACTAGATTTGGGATTATAGATACTGTTGATAATATCACAAGGCAGAGAATGGCTGGACGACAGCCAAACTTTGATGATAGAGGGAGGTCTGGTTCTGTCCCAGTTCCCCCGGAACAGAGTTGGGGTGTTTTTAGTGCTGGTCCTTATTTGATATTTCATGGTCAAGATCCTGGATTCATCTTGTCTAATGGCGGCCCAAGAGGTGGTCCCAGGCGTGTTGGTTTTGGTGACTATTTTATGGGTCCCAGACTGGAAGAACTTATCGAACAACTCACCACAAATGACCGGCATGGTCCTCCCCCAGCTGCACGTTCTTCAATTGATGCAATGCCTACTATCAGGATCACACATGCACATCTTCGCTCAGATTCACACTGTCCAGTTTGTAAAGAAAGATTTGAACTCGGCTCTGAAGCTAGGGAGATGCCATGTAACCATATTTACCACTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCGTGCCCTGTTTGCCGTGTTGAGCTGCTACCTCAAGGACATGTTTGTGTTCATGGTAGTCAAAGTTTGGGAGGAAGGAATGCCAACAGCAACATTGTCAATGATAGTAGCTCTCGAAGCAGGGAGAGTACCCCACAGAACCAAGGAAGGAGAAACCGATTTTCATTTTTGTGGCCATTCCGTGCTTCGACTTCAAACAACAATAATCATTATATTGACACTAGGGGAAGCAGCTCTTCAACCACTCCTGATCAGCATGGTGGAGCAAGTTATAGTGGATGGCACCTTTGA 999 0.4625 MSSGATHWCYTCRQTIVLEGREVICPHCDGGFVQELNELQGTAPQFTFPSQLGEHHQMPDLIDAIRASMGRRGSDTRFGIIDTVDNITRQRMAGRQPNFDDRGRSGSVPVPPEQSWGVFSAGPYLIFHGQDPGFILSNGGPRGGPRRVGFGDYFMGPRLEELIEQLTTNDRHGPPPAARSSIDAMPTIRITHAHLRSDSHCPVCKERFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELLPQGHVCVHGSQSLGGRNANSNIVNDSSSRSRESTPQNQGRRNRFSFLWPFRASTSNNNNHYIDTRGSSSSTTPDQHGGASYSGWHL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0146 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 317 - -
Lal22g0146 332 SMART ring_2 201 241 IPR001841 -
Lal22g0146 332 MobiDBLite consensus disorder prediction 305 332 - -
Lal22g0146 332 PANTHER OS03G0351800 PROTEIN 1 317 - -
Lal22g0146 332 SUPERFAMILY RING/U-box 181 248 - -
Lal22g0146 332 MobiDBLite consensus disorder prediction 262 285 - -
Lal22g0146 332 CDD RING-H2_RNF126_like 201 242 - -
Lal22g0146 332 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Lal22g0146 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 247 IPR013083 -
Lal22g0146 332 MobiDBLite consensus disorder prediction 305 324 - -
Lal22g0146 332 Pfam Ring finger domain 200 242 IPR001841 -
Lal22g0146 332 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0146 Lal-Chr22 918403 919401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0146 173 315 C3H Transcription Factor Family AT1G68180 40.559 2.56e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0146 K11982 - gmx:100813674 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1480 18 16731185 16732192 Lal22g0146 22 918403 919401 LSH
Lal22g0146 22 918403 919401 Lal6g0157 6 1126031 1127589 LSH