Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0143 ATGAGGAAGAAACTAGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATTATGCAAGCGGACGAGGATGTAGGGAAGATTGCAATGGCTGTTCCTCTTCTAGTTTCTAAAGCACTAGAGCTATTTCTACAAGATTTATGTGATCGAACATATGATATAACTGTGAGGAAAGGTGCAAAGACCATGAATGCTTTCCATTTGAAGCAGTGTGTACAAACCTTTAATGTCTTTGATTTTCTGAAAGACATTGTCAGCAAAGTTCCTGATTTAGGCGGCTCTGCTGCATCCGGTGACGATCGTGCTGTTACCAAGAGAAGGAAAGTTGCTGAAGACTGTGACAATGACAGCGACGAGGAGCAAAAGAAAAGTAAAATGCCAGAGCCTGGTCATACTAGTGGCAGAGGAAGGGGAAGGGGCAGAGGTAGGGGTCGTGGTCGAGGAAGTAGAACAGCAGATCAAGAGATGGCTTCACACGTCAAGGTTGAAGACGATTCTGATATATTGAACCAAAATGACAAGCACACTCAAAGCAATGAAAGCCTGGAAAATGTGGCAGGCCCTGAAGAAGTTAAGCAGAGTTTTTCAGTTAGCAAACCGGCTGAAACTTGCATTCGGAATTTTGATTTAAATATGGAACCAGATGAGAACATGGATTCGTTAGATGTACCTACTCCAGTCCCATCTAGTTCGCCTGTGAAATCAATGTCAGAAGAGAAGCATGAGGAATACCCTGGATGGTCATTGTCTGATATGGAAAAAATTGCCATTGATCCCGTGCAACTAGCAAACTTAAATAGAAATGTTGATGAAGATATGGAGGATTATGATGAAGAAATGTAG 840 0.4214 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITVRKGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSAASGDDRAVTKRRKVAEDCDNDSDEEQKKSKMPEPGHTSGRGRGRGRGRGRGRGSRTADQEMASHVKVEDDSDILNQNDKHTQSNESLENVAGPEEVKQSFSVSKPAETCIRNFDLNMEPDENMDSLDVPTPVPSSSPVKSMSEEKHEEYPGWSLSDMEKIAIDPVQLANLNRNVDEDMEDYDEEM 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0143 279 MobiDBLite consensus disorder prediction 145 170 - -
Lal22g0143 279 MobiDBLite consensus disorder prediction 90 197 - -
Lal22g0143 279 MobiDBLite consensus disorder prediction 99 134 - -
Lal22g0143 279 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Lal22g0143 279 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 278 - -
Lal22g0143 279 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Lal22g0143 279 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Lal22g0143 279 MobiDBLite consensus disorder prediction 211 246 - -
Lal22g0143 279 PANTHER HISTONE SUPERFAMILY PROTEIN 1 278 - -
Lal22g0143 279 Coils Coil 261 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0143 Lal-Chr22 905686 910992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0143 1 268 CCAAT-HAP5 Transcription Factor Family AT3G12480 44.330 4.10e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lal22g0143 CBFD_NFYB_HMF 4.7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0143 K21752 - gmx:100814800 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0143 22 905686 910992 Lal6g0154 6 1109133 1110800 LSH