Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0136 ATGGGCAATTGTTGCCCAGGTGGTGCAGAAGCCCCAGCTGACAATGCTGAAGCCGACAAGGGAGACACCAACAACCAACAAAGCACCGATAACAACAATGAAGCCTCGGCCACAACCCCACCACCATCATCAAAACAGTCACCCCCACCTTCTTCTAAGCCAGCAAAACAAGCCCCCATTGGCCCTGTCCTTGGGAGGCCAATGGAGGATGTGAAAGCTACCTACAGCATTGGGAAGGAACTAGGGAGAGGGCAATTTGGTGTGACACATTTGTGCACACATAAGGCAAGTGGAAAACAATATGCATGCAAAACCATTGCCAAGAGGAAGCTTGTGAACAAGGAGGACCTAGAGGATGTTAGGAGGGAGGTACAAATCATGCATCACCTTACTGGGCAGCCTAACATTGTCGAACTTGTTGGTGCCTTCGAGGACAAGCAATCTGTGAATTTGGTGATGGAGTTGTGTGCCGGTGGTGAGCTTTTTGACCGTATGATCGCAAAGGGACATTACACTGAGCGTGGCGCTGCTTCGTTGTTGAGAACCATTGTCCAGATTGTCCATACTTGCCATTCCATGGGTGTCATTCATAGGGACCTTAAGCCTGAGAATTTCCTCTTGTTGAACAAGGATGAGAATTCACCCCTCAAGGCAACAGATTTTGGTCTCTCAGTTTTTTACAAGCAAGGAGAGGTGTTTAAAGACCTTGTTGGCAGTGCATATTACATTGCACCTGAGGTCTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTAATACTCTACATTCTTCTATGTGGTGTTCCTCCATTCTGGGCAGAATCCGAAACTGGGATATTCAATGCTATTCTACGAGGTCACATTGACTTTACCAGCGATCCATGGCCCTCCATTTCACCTCAGGCAAAAGATCTTGTTAGGAAAATGTTGAACATGGATCCCAAGCAGAGACTGACAGCATATCAAGTCCTAAATCATCCATGGATCAAGGAGGATGGAGAAGCACCAGATACACCTCTTGACAATGCAGTGTTGAATAGGCTCAAACAATTCAGAGCAATGGATCAATTCAAGAAAGTAGCTCTCAAGGTCATTGCTGGGTGCCTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTCAAGGGGATGGATACTGATAACAGTGGAACCATTACAATTGAAGAGCTCAAACAAGGGCTTGCGAAACAAGGGACTAAGTTGACAGAACAAGAAGTTAAGCAATTAATGGAAGCCGCAGATGCTGATGGCAATGGAATCATAGATTACGATGAGTTCATCACAGCCACAATGCACATGAACCGGATGAACAGAGCAGACCATGTTTATACTGCATTCCAATACTTCGATAAAGATAATAGCGGCTACATCACTATTGAAGAACTAGAGCAGGCTCTCCATGAATATAATATGCATGACGGTAGGGACATCAAGGAAATCATTGCAGAAGTTGATGCAGATAATGATGGGCGAATTAACTATGACGAGTTTGCAGCAATGATGACTAAAGGACACACAGAAGCAGTTCCTACCAAGAAAAGGCGTGATTCATTTATCTCATAG 1596 0.4505 MGNCCPGGAEAPADNAEADKGDTNNQQSTDNNNEASATTPPPSSKQSPPPSSKPAKQAPIGPVLGRPMEDVKATYSIGKELGRGQFGVTHLCTHKASGKQYACKTIAKRKLVNKEDLEDVRREVQIMHHLTGQPNIVELVGAFEDKQSVNLVMELCAGGELFDRMIAKGHYTERGAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENSPLKATDFGLSVFYKQGEVFKDLVGSAYYIAPEVLKRKYGPEVDIWSVGVILYILLCGVPPFWAESETGIFNAILRGHIDFTSDPWPSISPQAKDLVRKMLNMDPKQRLTAYQVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMDQFKKVALKVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGIIDYDEFITATMHMNRMNRADHVYTAFQYFDKDNSGYITIEELEQALHEYNMHDGRDIKEIIAEVDADNDGRINYDEFAAMMTKGHTEAVPTKKRRDSFIS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0136 531 SMART serkin_6 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0136 531 MobiDBLite consensus disorder prediction 1 67 - -
Lal22g0136 531 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Lal22g0136 531 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Lal22g0136 531 ProSiteProfiles EF-hand calcium-binding domain profile. 487 518 IPR002048 GO:0005509
Lal22g0136 531 MobiDBLite consensus disorder prediction 42 56 - -
Lal22g0136 531 MobiDBLite consensus disorder prediction 19 41 - -
Lal22g0136 531 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 521 - -
Lal22g0136 531 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Lal22g0136 531 ProSiteProfiles Protein kinase domain profile. 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0136 531 CDD STKc_CAMK 75 332 - -
Lal22g0136 531 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Lal22g0136 531 Pfam Protein kinase domain 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0136 531 Gene3D - 341 518 - -
Lal22g0136 531 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Lal22g0136 531 Gene3D Transferase(Phosphotransferase) domain 1 161 340 - -
Lal22g0136 531 SMART efh_1 487 515 IPR002048 GO:0005509
Lal22g0136 531 SMART efh_1 380 408 IPR002048 GO:0005509
Lal22g0136 531 SMART efh_1 416 444 IPR002048 GO:0005509
Lal22g0136 531 SMART efh_1 452 480 IPR002048 GO:0005509
Lal22g0136 531 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 20 521 - -
Lal22g0136 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lal22g0136 531 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Lal22g0136 531 SUPERFAMILY Protein kinase-like (PK-like) 54 359 IPR011009 -
Lal22g0136 531 Pfam EF-hand domain pair 452 512 IPR002048 GO:0005509
Lal22g0136 531 Pfam EF-hand domain pair 381 441 IPR002048 GO:0005509
Lal22g0136 531 ProSitePatterns Protein kinases ATP-binding region signature. 81 108 IPR017441 GO:0005524
Lal22g0136 531 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Lal22g0136 531 SUPERFAMILY EF-hand 373 513 IPR011992 -
Lal22g0136 531 Gene3D Phosphorylase Kinase; domain 1 77 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0136 Lal-Chr22 874939 877911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0136 1 529 EF-hand Containing Proteins AT5G12180 79.887 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal22g0136 Pkinase 1.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0136 K13412 - gmx:100819061 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1496 18 16837439 16839885 Lal22g0136 22 874939 877911 LSH
Lal22g0136 22 874939 877911 Lal6g0141 6 1029324 1034112 LSH