Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0127 ATGAGAGAGAAAGATATTAATATAACAATTACAGTTGTGGCTACTACAAGGAGGTTGGCTTCAGATTCTGGTGGTGGTGCTTTTGTTGACTGGGCAGCAACTTCCTCCTCCGCCGCCAACCGCTCTGTCGCCGCCCCACCGGACGACTTATCACTTGGCTTCAATGCCACCGGACAAACTACCGGAGGAATCTTCTCCGGTGCCTCAACTAGGTCAATCAATTACAACCTTGCACCACCAGAAATGGGCATGGTTGGCCTCCGTGACCTTTTCGTAGTAACACCCGCTTCCACCTTCCACCATCAGCATGAACAACCGCACTTCTCCGACCACCCTCATCATCATTCCATCAATAATAGTTCCAACCCCGCCACTGCACTCGGTGTCGGCATCATCCCTCTCCTCGCTGCTACCCCTTGTCTCGACAATGAAACAATGATGGGTAACCGTAACCACAGCAGCGGGGCAACTCAGGGAATTCAGTTTTGGCAAGATCAACAACCTCATCATTACTTTAAAACCCACAATGTGAATGGTAGTCAAGAGAATTATGTTCAGAGTGGTGGCACCGGCGACGGTGGTGGTGTTGGATTAACTATAACTGGTTCGGGTACTAATAGTGGAGGAACAATGACATGCCAAGATTGTGGGAACCAAGCTAAGAAAGATTGCTCTAACAGAAGGTGCAGGACTTGTTGTAAGAGTAGAGGTTTTGATTGCCCTACTCACGTGAAGAGCACGTGGGTTCCTGCTGCACGCCGGAGAGAACGACAGCTTATGCAAGCGGTTACTGGTGCTGGTGGTTCTACTGCTTCTACTTCTGGTGCCAAGAAACCTAAGCTCATTTCTTCACACACTACTACTTCTCATACTTCAACTTCTAACACTACTCCTCCTAGAAGTTTTGACACTAGTTCTAGCCATCAAGATGCGGGTATGAAAGAGCCGCTGCCAGGTCAAATACGTGCACCTGCAGTGTTTAAGTGTGTTAAAGTGACTGCAGTAGAGGATGGAGAAGATGAGTATGCTTATCAAGCTGTTGTCAAGATTGGTGGCCATGTGTTTAAAGGGTTTCTCTATGATCAAGGGGTTGAAAATAGAGATGTTTATCCTAATCTGTCTGAGTTGCATTTAGGTGGCGGCAATGGTGGAAATGGAAGTGGTGGCATTGGATCTGGGAGAAATGTGGTTTCATCTTCATCGCCGATGATGGATCCTTCTGATGTTTATGGTGGGGGATTACTCGGAAGTTCAACCTATGGTAATCCAATAAATTGA 1278 0.4726 MREKDINITITVVATTRRLASDSGGGAFVDWAATSSSAANRSVAAPPDDLSLGFNATGQTTGGIFSGASTRSINYNLAPPEMGMVGLRDLFVVTPASTFHHQHEQPHFSDHPHHHSINNSSNPATALGVGIIPLLAATPCLDNETMMGNRNHSSGATQGIQFWQDQQPHHYFKTHNVNGSQENYVQSGGTGDGGGVGLTITGSGTNSGGTMTCQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMQAVTGAGGSTASTSGAKKPKLISSHTTTSHTSTSNTTPPRSFDTSSSHQDAGMKEPLPGQIRAPAVFKCVKVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGNGGNGSGGIGSGRNVVSSSSPMMDPSDVYGGGLLGSSTYGNPIN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0127 425 MobiDBLite consensus disorder prediction 263 311 - -
Lal22g0127 425 MobiDBLite consensus disorder prediction 262 318 - -
Lal22g0127 425 MobiDBLite consensus disorder prediction 388 403 - -
Lal22g0127 425 MobiDBLite consensus disorder prediction 382 403 - -
Lal22g0127 425 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 82 425 IPR007818 GO:0003700|GO:0006355
Lal22g0127 425 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 317 364 IPR006511 -
Lal22g0127 425 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 82 425 - -
Lal22g0127 425 Pfam Domain of unknown function (DUF702) 210 365 - -
Lal22g0127 425 MobiDBLite consensus disorder prediction 102 122 - -
Lal22g0127 425 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 212 254 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0127 Lal-Chr22 810342 815063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0127 13 409 C2H2 Transcription Factor Family AT5G12330 49.176 4.91e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lal22g0127 DUF702 2.5e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0127 - - lang:109357487 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0127 22 810342 815063 Lal22g0127 22 810342 815063 ECH
Lal18g1503 18 16881912 16886343 Lal22g0127 22 810342 815063 LSH