Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0125 ATGGAAGAATCAAGTGAATTGCATAGAAAAAAACACAAATTCCTTATGGTGAAAAATAAGAAAAGAAAGCTCAAAACACCGTCCCAGGTTGCAGGATTGGAGAAACTTTATAATGAGCACAAATATCCCACAGAAGAAATGAGGATAGAACTTGCTAAAGAGTTAGGGTTGACAGAACAGCAAGTATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGACTGTTGAAAGATGAATCTGTTGCTAATGGACGACAAGATCGTTCGAGTGGTGTCATCCAGGATCATGGCAGTGGACTTGGGCAAGATTCATGTGGAAGCAGTAAACATGGTGAATACAAGTATCTGGATCCCAAAGAGGTTGAGACCCAAGTCCTACACAACAATGGTTTTTCAGCTGCAGGTTTGGCCTACGGACATAGGAACCATTGTACAGAAAATGTCAGCGGAATGGAGGACACTTCATCTGAGAGTAGCTCATATTTGCAAGATAGATTGTTTCCTCAAGGCCAGGATCCATATTATATGGAGTCTTCTAGATACCTTACACCTAATAGAGCTCTTCCGCCCCTAAATCCCAAGAGTGTAATTAACGCGAGACACAAAGCAGCAGGATATTTGAAAATGAGGGGTGAGATAGAAAATGCTGCTGTAACTGCTGTTAAGAAGCAATTAGGAAGGAGTTATCGAGAAGATGGTCCACTACCTAGTGTAGAATTTGATCCACCTCCTCCAGGGGCATTTGAAGGCCAAAATTCAGATACAGTTCATGAACTATATGGTGTTGCAAATCCTTCTCTTCCAAATTCTCAAGATATCTCTCCCTTAAAAAGGCAACCTATTCTTGGCTCTAGATATAATTGGTATAATACTAAATTTAGTTCCCAAGATTCACATATGGAAGTTGACTTAAGCTCCTTGCATGGTGGCGCTGATTTCCAGGATAAGAAAGCTCGGAAGAGTATAAAACAGAGGCAAACTTTTTACATTAATAATCATTTTCCTGGCAGGAACTCTTCCCTGGAATTGTATGAAGACGATAATGTCGAAGCTTCTGCTTATAATAGCACTAAGAATCATAGAGCATGCATTATGCATGGTGTTGAGGGAATGGGATCTGATTCTACTTCTGCCCACAACGACCACTATGAAGAGGACCTCGCGGTTAAGCAGACAGACTTGCTGCAACATGGCTATGATAATCTCAATCTGAAGAATGTGCAAAGGAGTGGACATTCAAAATCTAAGGCTTCAAATTCAGTCCTCAATCCTCAAATTTCTGCCGATACTGAAGAAAGAGGGCATCCTACTTGGACGGCAAAGGAAGGGATGTTTAAGGGGGGCAGAAAGCCAAAAAAACAACAGTGTGATGCAGATGGAGCAAAGATGCTCTCAAACGAAATCACGGATGCAAAGAAAATTAAAGTTGACCCACTTCAACAATACCATGTGAAACAAGCACCCGTTGCTGAGATTGACCAAAGGAAAATTCAAAGATCTGCTACACAGATACCATCTAGCTTTAGCGAGGACGAAACTGCTGATGCCAGTTCCTGGCTTGATTAA 1569 0.4117 MEESSELHRKKHKFLMVKNKKRKLKTPSQVAGLEKLYNEHKYPTEEMRIELAKELGLTEQQVSGWFCHRRLKDKRLLKDESVANGRQDRSSGVIQDHGSGLGQDSCGSSKHGEYKYLDPKEVETQVLHNNGFSAAGLAYGHRNHCTENVSGMEDTSSESSSYLQDRLFPQGQDPYYMESSRYLTPNRALPPLNPKSVINARHKAAGYLKMRGEIENAAVTAVKKQLGRSYREDGPLPSVEFDPPPPGAFEGQNSDTVHELYGVANPSLPNSQDISPLKRQPILGSRYNWYNTKFSSQDSHMEVDLSSLHGGADFQDKKARKSIKQRQTFYINNHFPGRNSSLELYEDDNVEASAYNSTKNHRACIMHGVEGMGSDSTSAHNDHYEEDLAVKQTDLLQHGYDNLNLKNVQRSGHSKSKASNSVLNPQISADTEERGHPTWTAKEGMFKGGRKPKKQQCDADGAKMLSNEITDAKKIKVDPLQQYHVKQAPVAEIDQRKIQRSATQIPSSFSEDETADASSWLD 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0125 522 CDD homeodomain 20 75 IPR001356 GO:0003677
Lal22g0125 522 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Lal22g0125 522 MobiDBLite consensus disorder prediction 497 522 - -
Lal22g0125 522 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Lal22g0125 522 SMART HOX_1 18 80 IPR001356 GO:0003677
Lal22g0125 522 MobiDBLite consensus disorder prediction 496 522 - -
Lal22g0125 522 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 521 - -
Lal22g0125 522 MobiDBLite consensus disorder prediction 82 109 - -
Lal22g0125 522 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 521 - -
Lal22g0125 522 MobiDBLite consensus disorder prediction 86 106 - -
Lal22g0125 522 Gene3D - 10 92 - -
Lal22g0125 522 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0125 Lal-Chr22 772385 778007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0125 19 522 Homeobox Transcription Factor Family AT4G03250 37.429 2.38e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal22g0125 Homeodomain 7.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0125 - - gmx:100803515 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0125 22 772385 778007 Lal22g0125 22 772385 778007 ECH
Lal18g1505 18 16909193 16914108 Lal22g0125 22 772385 778007 LSH
Lal22g0125 22 772385 778007 Lal6g0129 6 858452 863245 LSH