Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0124 ATGGTGGATTTCAGCTCTGGTGAAGGGTTTGAACTGTTGAGGCGTCTCAATTCGGGGTTGAGTGAGGGTTTTGAGTTAATTCTTGAGCGAATTGATGAATGGAAGGGTTTGGATATGAAAATGGTTTCTAGTCAGTGCTTTTTTGGTTTTTGTTTTTTTAATTGTTTCTACGGGGTGATGTCACGTGGTGATAGAATGACTTCGGATCTTAACAGAACTGGTAATGTTGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGGGGAAAGCCCAAATTTTGCCCCTTTCGTCTTTCAAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCACCTCAAACTGAGCCATGTGTCTAGAATTATATCTGGGCAACGCACGCCCATCTTTCAAAGATATCCGCGACCTGAGAAGGAATACCAGTCTTTTTCTCTTATCTACAATGATAGGTCACTGGACATGATTTGCAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCCCGTAGTCATCATCGGAAGTGGAGAACTGATTCCAGAAGTGACGGTGTTCCATCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCACCTTTGAATTCTCCATTTGATAGTAATGAAAGCTTGCAAAAGGATAGCGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGCCCCCCAAAGAATGGTTTGGACAAAGCATTTTCTGATGTGGTTCTGTATGCTGTTCCTCCAAAGGTTTTCTTCCCTCCAGAGTCTGCCAGTGGCTCAGTCCACTCTGTATCATCCGGAGGATCAGATAGTACACATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGACGCTTTAGGTGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTTTGGGTGGTGGGACTCACCGAGTTGGGAGTTGTCTGGGAGCAAAAATGGATTCTCTATTTCCCAAGGCCTTGGAATCTGCAGTAGTTCTTGATGTACAGAACATTGCTTGTGGTGGACAACATGCCGCCTTAGTGACCAAACAAGGCGAAATTTTCTCATGGGGAGAGGAATCAGGAGGCAGGCTTGGGCATGGTGTTGACTCTGATGTTCTCCACCCAAAGCTTATAGAATCTCTAAGTAATACAAATATCGAACTTGTAGCTTGTGGGGAGTATCATACGTGTGCTGTGACACTCTCTGGTGATCTTTATACGTGGGGTGATGGCACGTACAATTATGGTCTTCTGGGCCATGGAAATCAAGTGAGCCACTGGGTCCCTAAAAGAGTAAATGGACCATTGGAGGGCATACACGTTTCATCTATTTCTTGTGGACCATGGCATACTGCTGTCGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGGAAAAATGTATCGTTACCAAGGGAAGTAGAGTCCCTCAAAGGACTTCGTACTGTACGGGCTGCTTGTGGGGTTTGGCATACTGCTGCAGTTGTTGAAGTCATGGTTGGAAATTCGAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGTCATGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCGGCCCTTGTTGAACCCAATTTTTGTCAAGTTGCTTGTGGAGAGAGTCTGACTGTTGCTCTAACGACTTCAGGCCATGTCTATACAATGGGCAGTCCTGTTTATGGCCAGTTGGGAAATCCTCAAGCCGATGGGAAGTTACCAATCCGTGTTGATGGAAAGCTTTCGAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCTTATCATGTTGCAGTTTTAACATCAAGGACTGAAGTTTACACTTGGGGGAAGGGTGCCAATGGCCGTTTAGGCCATGGGGACACAGATGATAAAAATGGCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACTAATTTCACAGCAGCTATCTGTCTGCATAAATGGGTATCTGGTGTTGACCAGTCTATGTGTTCTGGCTGTCATCTTCCATTTAATTTCAAAAGAAAACGTCACAACTGTTACAATTGTGGACTTGTGTTTTGCCATTCATGTAGCAGCAAGAAGTGTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGCGATAATTGTTTTAATAAACTAAGGAAAGCTATAGAAACTGATCCTTCATCTCATTCTGCCGTGAGCAGAAGAGGAAGTATCAATCAAGGGTCACTTGAGTTAATTGATAAGGACGATAAATTGGATTCCAAATCTCGTTATCAACTTGCCAGATTTTCTTCAATGGAATCCTTGAAACAAGTGGAAAGCAAATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGCAGCCGTGTCTCACCTGTTCCAAATGCAGGTTCACAATGGGGAGCACTGAATATTTCTAAATCTTTAAATCCTGTTTTTGGATCATCAAAGAAATTCTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACCACTCCAACTCCAACACTAGGAGGTCTTACTTCACCGAAGATAGTTGTCGATGATGCTAAGAAGACGAATGATAGCCTTAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGAAAAGCCCAATTTCAAGAAATTGAGTTGGAAAGAACAGCTAAACAGCTAAAAGATGCCATAGCAATTGCCGGGGAGGAAACTGCCAAATGCAAAGCAGCAAAAGAAGTGATAAAGTCGCTTACTTCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCAGCTAGGAATATCAAATCACCTTCTTCTCTTGCTTCATTTGGTTCCACTCCTGGTTCCAATGAAGTTAGCTATGCTTCCATTGATCGGTTGAATATTCAAGCAACAAGCCCAGAAACAGACTTAACTGGATCGAATAACCAACCACTTTCTAATGGATCAAGCACTATTAGTAACCGTAGTGTTGGTCACAATAAACAAAGCCAGTCAGATGCAACTAATAGAAATGGGAGCAGAATGAAGGATAGTGATTCCCGTAATGAGACAGAATGGGTTGAACAAGATGAATCTGGTGTATATATCACGCTCACCTCCCTATCAGGAGGTGTAATCGAGCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAGCAAGCTGAACAATGGTGGGCTGAGAATCGTGCAAGAGTATATGAGCAATATAATGTGCGCATGATTGACAAGTCCACTGTTGGAGTTGGGAGTGAAGACTTGGCTCATTGA 3507 0.4331 MVDFSSGEGFELLRRLNSGLSEGFELILERIDEWKGLDMKMVSSQCFFGFCFFNCFYGVMSRGDRMTSDLNRTGNVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDMICKDKDEAEVWFSGLKALISRSHHRKWRTDSRSDGVPSEANSPRTYTRRSSPLNSPFDSNESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVVLYAVPPKVFFPPESASGSVHSVSSGGSDSTHGHMKTMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHRVGSCLGAKMDSLFPKALESAVVLDVQNIACGGQHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKNVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGESLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPIRVDGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDKNGPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCHLPFNFKRKRHNCYNCGLVFCHSCSSKKCLKASMAPNPNKPYRVCDNCFNKLRKAIETDPSSHSAVSRRGSINQGSLELIDKDDKLDSKSRYQLARFSSMESLKQVESKSSKKNKKLEFNSSRVSPVPNAGSQWGALNISKSLNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKKTNDSLSQEVIKLRSQVENLTRKAQFQEIELERTAKQLKDAIAIAGEETAKCKAAKEVIKSLTSQLKDMAERLPVGAARNIKSPSSLASFGSTPGSNEVSYASIDRLNIQATSPETDLTGSNNQPLSNGSSTISNRSVGHNKQSQSDATNRNGSRMKDSDSRNETEWVEQDESGVYITLTSLSGGVIELKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTVGVGSEDLAH 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0124 1168 Coils Coil 982 1002 - -
Lal22g0124 1168 SUPERFAMILY RCC1/BLIP-II 326 717 IPR009091 -
Lal22g0124 1168 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 80 1154 - -
Lal22g0124 1168 SUPERFAMILY FYVE/PHD zinc finger 716 786 IPR011011 -
Lal22g0124 1168 MobiDBLite consensus disorder prediction 1083 1098 - -
Lal22g0124 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 612 663 IPR000408 -
Lal22g0124 1168 MobiDBLite consensus disorder prediction 1043 1082 - -
Lal22g0124 1168 MobiDBLite consensus disorder prediction 849 864 - -
Lal22g0124 1168 Pfam Unstructured region between BRX_N and BRX domain 1019 1088 - -
Lal22g0124 1168 MobiDBLite consensus disorder prediction 202 230 - -
Lal22g0124 1168 MobiDBLite consensus disorder prediction 894 922 - -
Lal22g0124 1168 Pfam Transcription factor BRX N-terminal domain 977 1011 IPR027988 -
Lal22g0124 1168 SUPERFAMILY PH domain-like 79 187 - -
Lal22g0124 1168 CDD FYVE_like_SF 725 778 - -
Lal22g0124 1168 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 375 385 IPR000408 -
Lal22g0124 1168 Pfam Pleckstrin homology domain 81 187 IPR001849 -
Lal22g0124 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 496 547 IPR000408 -
Lal22g0124 1168 Pfam FYVE zinc finger 716 782 IPR000306 GO:0046872
Lal22g0124 1168 MobiDBLite consensus disorder prediction 1043 1098 - -
Lal22g0124 1168 Gene3D - 79 196 IPR011993 -
Lal22g0124 1168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 788 IPR013083 -
Lal22g0124 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 389 440 IPR000408 -
Lal22g0124 1168 Pfam Transcription factor regulating root and shoot growth via Pin3 1094 1149 IPR013591 -
Lal22g0124 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 441 495 IPR000408 -
Lal22g0124 1168 MobiDBLite consensus disorder prediction 194 250 - -
Lal22g0124 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 560 611 IPR000408 -
Lal22g0124 1168 PRINTS Chromosome condensation regulator RCC1 signature 372 385 IPR000408 -
Lal22g0124 1168 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Lal22g0124 1168 PRINTS Chromosome condensation regulator RCC1 signature 441 457 IPR000408 -
Lal22g0124 1168 PRINTS Chromosome condensation regulator RCC1 signature 482 498 IPR000408 -
Lal22g0124 1168 PRINTS Chromosome condensation regulator RCC1 signature 498 512 IPR000408 -
Lal22g0124 1168 PRINTS Chromosome condensation regulator RCC1 signature 601 619 IPR000408 -
Lal22g0124 1168 PRINTS Chromosome condensation regulator RCC1 signature 659 680 IPR000408 -
Lal22g0124 1168 Gene3D - 555 727 IPR009091 -
Lal22g0124 1168 Gene3D - 306 554 IPR009091 -
Lal22g0124 1168 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 80 1154 - -
Lal22g0124 1168 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 482 492 IPR000408 -
Lal22g0124 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 665 712 IPR000408 -
Lal22g0124 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 389 437 IPR000408 -
Lal22g0124 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 611 660 IPR000408 -
Lal22g0124 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 440 492 IPR000408 -
Lal22g0124 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 559 608 IPR000408 -
Lal22g0124 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 496 544 IPR000408 -
Lal22g0124 1168 Coils Coil 926 967 - -
Lal22g0124 1168 CDD PH_PLC_plant-like 78 188 - -
Lal22g0124 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 327 388 IPR000408 -
Lal22g0124 1168 ProSiteProfiles BRX domain profile. 1095 1150 IPR013591 -
Lal22g0124 1168 MobiDBLite consensus disorder prediction 832 864 - -
Lal22g0124 1168 SMART fyve_4 714 783 IPR000306 GO:0046872
Lal22g0124 1168 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 534 544 IPR000408 -
Lal22g0124 1168 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 720 782 IPR017455 -
Lal22g0124 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 664 715 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0124 Lal-Chr22 761042 770482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0124 986 1159 Major Intrinsic Protein MIP AT1G31880 33.696 8.36e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0124 - - gmx:100806439 1929.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0124 22 761042 770482 Lal22g0124 22 761042 770482 ECH
Lal18g1506 18 16918791 16926885 Lal22g0124 22 761042 770482 LSH