Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0117 ATGACTTCTACTATCCTCAGAAGAACCTCTTCAATCCTCAAAAACCGTCCTTTTATTTCCTTAACATCCATTTCCACCCAACCCCTTCTCCATCGCATCAACAATTCCTCCACCGCCGCCGCTGCAACAACATCCGGCGGAGACCCTTTGAAATTCTCAGGCCTGTTCGAGTCCAAAGCGCGTTTTTTTTACTCGAATTCGTTCCCCTTGAGTTTTCACGCCTCTTCTGTTTCTCGAGCTGAATATGCTGTAGATGATTACCCATTGGAAGAGGCATCCAAAGGGAACAACGCTGATGAAGGCCTCCAAGTTGCAAAATTAGGGATTGCTCAGGAGATTGTATCTGCTCTCGCCAAAAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATCGGTCGTGCTCGAACTGGAACTGGGAAAACTCTTGCATTTGGGATACCCATCATGGATAAGATCATTAAGTTTAATGCTAAGCATGGGTTGATGGATTATGTAATTCATTCAGCTTGGCTAGAGGGCATTGACATACGAGGAAAGTCTCCTCTAGCTTTGGTTTTGGCTCCAACCAGAGAGTTGGCGAGGCAGGTTGAAAATGAGTTCGCTGATGCAGCACCTAACTTGGATACGATTTGTGTTTATGGGGGTACACCTATCTCTCAACAAATGAGGCAGCTTGATTATGGTGTTGATATTGCAGTAGGCACACCTGGTCGAATTATTGACCTTCTCAACAGAGGTGCCCTAAATTTGAAGGAAGTTCAGTTTATGGTTATCGACGAAGCTGATCAGATGCTCCAAGTAGGCTTTCAGGATGATGTGGAGAAGATCTTGGAGAGGTTGCCTGCAAATCGTCAGACTCTTATGTTCTCTGCAACAATGCCATCCTGGATAAAGGAGATTACACGCAATTACCTAAAAAATCCCCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTACATTGTACTCAATTGCAACTGATTCATATGTTAAGGCGGGAACTCTTGGACCACTAGTGAAAGAACATGCGAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGACGCTGATCGATTATCATATGCCCTGGCAAAAAGTCTTCAATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGAGAAAGAACTCTTGCTGGCTTCAGAAATGGTCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCAAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCTTCAGAGATATTTGTTCACCGATCAGGAAGAACAGGCCGCGCTGGTAAGAAAGGAACTGCTATTCTTGTTTATACAGAAGATCAAACCAGGACTGTTAGGACTATTGAGCGTGATGTAGGCTGTAGATTTACAGAGCTACCAAAGATTTCTGTTGCACCTGGGTCAGTGGACACTTTTGGTGGCATGGGTGGTGGACGATTTGGTTCTTATGGAGGTTCAAGGGATCGTCGATCTGGTGATACAGGTTTTGGCCGTACTGGGGGCTACGGCAACTCTGGATCTGGCCGCTCTAGCTATGGAAGTTCTGGTGGAAAGTTTGGTGGATCAAGTCGTTTTGGTGCATCTGATGAAATGAATAGATTTGGTGGTCAAAGCTCTGGCCGTTATGGCTCCTCTGGTGGCTTTGGTTCAGGTCAATCCTCTGGTGGCTTTGGTTCAGGTCAATCCGGAAGCACACAATCTGGTGGTTTTGGGGGATTTCGTAGTTCAGATCGTTCTGGTGGTTTTGGCTCAGGTGCATTGGGTGGTTCCCGTGATGGTAGTGATCGGAACAATAGGGGAAGTCCATTCTAA 1899 0.4523 MTSTILRRTSSILKNRPFISLTSISTQPLLHRINNSSTAAAATTSGGDPLKFSGLFESKARFFYSNSFPLSFHASSVSRAEYAVDDYPLEEASKGNNADEGLQVAKLGIAQEIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIKFNAKHGLMDYVIHSAWLEGIDIRGKSPLALVLAPTRELARQVENEFADAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFMVIDEADQMLQVGFQDDVEKILERLPANRQTLMFSATMPSWIKEITRNYLKNPLTIDLVGDSDQKLADGITLYSIATDSYVKAGTLGPLVKEHAKGGKCIVFTQTKRDADRLSYALAKSLQCEALHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQTRTVRTIERDVGCRFTELPKISVAPGSVDTFGGMGGGRFGSYGGSRDRRSGDTGFGRTGGYGNSGSGRSSYGSSGGKFGGSSRFGASDEMNRFGGQSSGRYGSSGGFGSGQSSGGFGSGQSGSTQSGGFGGFRSSDRSGGFGSGALGGSRDGSDRNNRGSPF 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0117 632 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 53 552 - -
Lal22g0117 632 SMART helicmild6 377 457 IPR001650 -
Lal22g0117 632 CDD DEADc 113 324 - -
Lal22g0117 632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 496 IPR001650 -
Lal22g0117 632 CDD SF2_C_DEAD 337 466 - -
Lal22g0117 632 Gene3D - 103 327 IPR027417 -
Lal22g0117 632 Pfam Helicase conserved C-terminal domain 356 457 IPR001650 -
Lal22g0117 632 Gene3D - 349 498 IPR027417 -
Lal22g0117 632 MobiDBLite consensus disorder prediction 561 602 - -
Lal22g0117 632 SMART ultradead3 121 340 IPR014001 -
Lal22g0117 632 MobiDBLite consensus disorder prediction 527 547 - -
Lal22g0117 632 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 552 - -
Lal22g0117 632 MobiDBLite consensus disorder prediction 509 632 - -
Lal22g0117 632 Pfam DEAD/DEAH box helicase 126 311 IPR011545 GO:0003676|GO:0005524
Lal22g0117 632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 323 IPR014001 -
Lal22g0117 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 478 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0117 Lal-Chr22 727067 731701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0117 107 489 Eukaryotic Initiation Factors Gene Family AT3G19760 31.783 4.26e-66 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0117 - - ahf:112702088 745.732