Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0109 ATGACTCAATTGGAACCTGGTATATTTGGGGTCATGGATAGTGCAAATGAAGCATCATCATCCTTGAGCTTTGTGTCATCTCTCTTATCAAATGGTTCTAGCAATGAGCATGAGGCAAATACTGAAATTTTGAGTCTAAGTAGACTCAGTGGAAGCCTTGAGAAGTTATTGATTGATGGAGAATATGATTATAGTGATGCTGAGATTCTTGTTGAAGGCATCCCTGTGGGTGTTCATAGGGGTATATTGGCTTCACGTAGTTCATTTTTTCATGAGCTTTTTAAGAAAGGAAATGTGGATTCAGTGAAGGAAGGAAAGCCAAGGTATCTAATGTCAGAATTGGTGCCTTATGGGAGGGTTGGTTATGAAGCATTCCAAGTTTTCTTGCATTATTTGTATACAGGAAAATTAAAGGGTTCACCACTAGAAGTGACAACATGTGTTGATGAATCATGTATTCATGATGCTTGCCGCCCTGCTATCAATTATGCTTTGGAATTTATGTATGCTTCTACCACTTTTCAGATGAAAGAGCTTGTTTTACTTTTTCAGAGGCATCTCCAAAATTTTGTTGAGAAGGCTCTAGTGGAAGATGTCGTTCCTATTCTCATGGCCGCATTCCACTGTCAATTAAGCCAGCTTCGCTGTCAGTGCATTCAGAGAGTAGCAAGGTCTGACCTTGACAGCATATCTTTGGAAAAAGAACTCCCTCATGAAGTTATGACTGAAATCAAATCGCTCCGAGTTCAACCTCATACAGAATCCACACCTAATAATGCAATGGAAGTGGAACCTTTGAATAGCAAGAGTATCAGGAAAATCCATAAAGCATTGGACATTGATGATGTTGAGCTACTGAAGCTTCTTTTGAATGAGTCTAGTATCACTCTCGATGATGCTTGCGCCTTGCACTATGCCTGTGCCTATAGTCAGGCTAAGGTTGTTCAAGAGGTTCTTACTTTAGGCCTGGCTGATATTAACCATAGAAATGTGAGAGGATATAAAGTTCTTCATGTGGCTGCAAGAAGAAAAGATCCATCCATTTTGGTAGCACTACTGAAAAAGGGGGCATGTGCATCAGATACAACTCCTGATGGACAAACTGCACTTTCAATATGTCGAAGGTTGACTCGGCGCAAGGATTACCATGAGAAAACAATGCAAGGAAATGAATCTAACAAAGACAGGCTCTGTGTTGATGTCCTTGAGAGAGAGATGAGAAGAAATTCTATGTCTGTTTCATCAGAGTTAACTGCTGATGAATTGCACATGAGACTTGATTACCTTCAAAATAGAGTTGCATTTGCTAGGCTGTTGTTTCCTGCTGAGGCTAGGGTAGCCATGGAGAATGCTGAGGCAGACTCAACATCACTGTATTCAAGCTCCACAGCTTTGAAGGGATCAAGTGGTAATCTAAAAGAAGTAGATCTAAATGAAACTCCCTCTGCTCAGACCAAAATACTCGTGCATTCCCTTCTTAAGACAGTTGAGAATGGTAGGCGCTTCTTCCCCCATTGCTCTGAGGTGATTGATAAGTTTCTAGAAGACGATATGGCTGATGTTTTCTTCCTAGAGAAAGGCACAGAAAAAGAGCAGAAAATGAAGAAAGCACGCTTCATGGAACTTAAAGATGATGTGCAGAAGGCATTTCACAAGGACATGGCTGAAAGTAACCACCATTCTGGTCGTTTTTCGTCCTTGTTGTCATCCTCATCTTCCTCGTCTCGAAGAGAAAGTCTAGGCCATAGAGTGAGGAAAAGATGA 1764 0.4099 MTQLEPGIFGVMDSANEASSSLSFVSSLLSNGSSNEHEANTEILSLSRLSGSLEKLLIDGEYDYSDAEILVEGIPVGVHRGILASRSSFFHELFKKGNVDSVKEGKPRYLMSELVPYGRVGYEAFQVFLHYLYTGKLKGSPLEVTTCVDESCIHDACRPAINYALEFMYASTTFQMKELVLLFQRHLQNFVEKALVEDVVPILMAAFHCQLSQLRCQCIQRVARSDLDSISLEKELPHEVMTEIKSLRVQPHTESTPNNAMEVEPLNSKSIRKIHKALDIDDVELLKLLLNESSITLDDACALHYACAYSQAKVVQEVLTLGLADINHRNVRGYKVLHVAARRKDPSILVALLKKGACASDTTPDGQTALSICRRLTRRKDYHEKTMQGNESNKDRLCVDVLEREMRRNSMSVSSELTADELHMRLDYLQNRVAFARLLFPAEARVAMENAEADSTSLYSSSTALKGSSGNLKEVDLNETPSAQTKILVHSLLKTVENGRRFFPHCSEVIDKFLEDDMADVFFLEKGTEKEQKMKKARFMELKDDVQKAFHKDMAESNHHSGRFSSLLSSSSSSSRRESLGHRVRKR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0109 587 ProSiteProfiles BTB domain profile. 65 141 IPR000210 GO:0005515
Lal22g0109 587 SUPERFAMILY Ankyrin repeat 260 376 IPR036770 -
Lal22g0109 587 SMART ANK_2a 298 328 IPR002110 GO:0005515
Lal22g0109 587 SMART ANK_2a 332 361 IPR002110 GO:0005515
Lal22g0109 587 Pfam BTB/POZ domain 63 181 IPR000210 GO:0005515
Lal22g0109 587 MobiDBLite consensus disorder prediction 550 587 - -
Lal22g0109 587 CDD BTB_POZ_NPR_plant 54 191 - -
Lal22g0109 587 Gene3D - 266 406 IPR036770 -
Lal22g0109 587 SMART BTB_4 65 191 IPR000210 GO:0005515
Lal22g0109 587 SUPERFAMILY POZ domain 49 189 IPR011333 -
Lal22g0109 587 Pfam Domain of unknown function (DUF3420) 226 275 IPR024228 -
Lal22g0109 587 PANTHER REGULATORY PROTEIN NPR3 12 582 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lal22g0109 587 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 12 582 - -
Lal22g0109 587 Pfam NPR1/NIM1 like defence protein C terminal 374 573 IPR021094 -
Lal22g0109 587 Pfam Ankyrin repeats (3 copies) 276 357 IPR002110 GO:0005515
Lal22g0109 587 Gene3D Potassium Channel Kv1.1; Chain A 30 223 IPR011333 -
Lal22g0109 587 MobiDBLite consensus disorder prediction 560 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0109 Lal-Chr22 669663 674414 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal22g0109 NPR1_like_C 4.2e-75 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0109 K14508 - gmx:100816582 854.358