Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0098 ATGTACCAAGAAAGTAATTGGATGGACAAAGATTCTGAGGATTCTATGCCAGCTCATGGCGCCAAAGGTTCGTCTGAGATGGTCTCACTTAATGTTGCCAAAAAAGTTGAAAGCAGTGCATGGGAGGTACCAAGAGGGGCTGATGCATTTCATGCTACAAGTGGCGTTAGCTTGTTTTCTAGTTCGCTTCCTGTTCTTCCACATAAAAAGTTCAATTTTACTGATTCTGAGCATTATGGTCAATCTGCTGATGATAACTTCCCAATATTAGACAAAGTTCACAATGGGGATGAAGGACAAGATCCACTTGAAGACATTACAACGAATGCAATAGGAAACATGCTTCCTGATGATGAAGATGATCTATTAGCTGGGATAATGGATGACTTTGACCTGACTAGGTTGCCGAACCAGCTGGAGGATCTGGATGAAAATGATCTTTTTGGCAGTGGAGGCGGGTTGGAAATGGATTTTGAACTCCAAGATGGTATTAATATCGGTATTTCAAAGATAAGCTTATCTGATGGAGTCCCTTCAAATGGTTTTGGTCATTTTGCAATCCCAAATGGCATAGGAGCAGTGGCTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTGAGGAATATCAATAGCAATGTGGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGAGACATCAGAACATTGTACACTGCATGCAAGCATAGAGGCTTTGTGATGATTTCTTACTATGATATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAGCTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAGGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGACGACCTTCGTCAAATATTTGGAGCTTATGGGGAGGTCAAAGAGATCAGGGAAACACCTCATAAGAGGCACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGATGCTGCTCTTAAAGCATTAAATCGAATTGACATTGCAGGGAAACGCATCAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTCGAAATAATGGTTGTGGAACATTTAAGTTTCCAATCGATCTGAAGTTTTATGAGAACGATTACAGCGGTGAAGGTGTGAAATCTGCTGCTTTCTATGGAACTTTAGCTAGGCAATTGCATGTCTTTGCATCCTCCTTTTCTTGCGATTATCTACAATACATCTTGATGCAACAAATGACTGAGCTGGAGCAAGATGAAACTCGAACTTTTAGACATCAAGTGGGTTCACCTATTGCCAATTCTCCGCCTGGTAACTGGGCACACTTTGGGAGTCCAGTTGAACATAATCCATTAGGTTCTTTTAGCAAATCTCCCGGTTTGAGTTATTGCAGCCCTATGAATACCAGCCATTTGCCTGGATTAGGAGCAATTCTTTCTCCACATGCGGCAACATCTCCAAAGATTGCACCAATTGGCAAGGACCCTGGAAGGGCTAATAATGCAAATCAGATATTTGCAAGCTCTGGATCTTCACAAGGAGTGGCTTTTCAGCATTCTATGTCCTTTCCAGAGCATAAAGTAAATTCTAGCCCTAGGCCTATATCTACTTTTGGTGAATCAAAATCAAGTTCTTCAAGTGTTGGAACACTGTCTGGTCCTCAATTTCTGTGGGGAAGTCCAACTCCTTACTCGGAACATTCGAACACATCTGCCTGGTCTTCAACTTCTGGGGGACTTCCATTTACTTCTAGTGGACAAAGGCAGGGTTTCCCATATACTAGTCGGCACAACTCACTTTATAACTCTCTCCCGCATCATCATGTGGGATCTGCTCCATCTGGCCTTCCTTCTGAGAGGCATTTTAGATACTTTCCAGAGTCACCTGAAACTTCTGTCAAGAGTTCAGCTGCATATGGAAGTTTGAATCACAGCGATGGGAATTTTTTTATGAGCATGGGTGCTCGTGGATCCGTAGGAGTTGGTGTTGGCCTTCCAGGAAATATGACTGAAATTAGTTCACCTAATTTCAGAATGATGTCACTGCCTTTGCATGGTTCCTTGTTCCTTGGAAATGGTATGTATTCTGGACCAGGAGCAACAAACACTGAGGGATTGGCTGAACGAGGTCGAAGTAAGCGACCTGACAATAGTGGGAGCCAGATTGATAGCAAGAAGCAGTACCAGCTTGATCTGGACAAGATTATGACGGGAGAAGACACGAGGACAACATTAATGATTAAAAACATTCCTAACAAGTACACTTCAAATCTACTGCTTGCTGCTATTGATGAGAATCACAAGGGTAGTTATGACTTCCTCTACTTACCAATTGACTTTAAGAACAAGTGCAATGTGGGTTATGCTTTCATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCATTTAACGGGAAGAAATGGGAGAAGTTTAATAGCGAGAAAGTTGCTTCACTGGCATATGCACGTATCCAGGGAAAGGGTGCCCTTGTGACACATTTTCAGAATTCAAGCCTAATGAATGAGGATAAGTGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGAGATTGGTGACCAGGAACATTTCCTCTCAAGCAATTTGAATATATGCATTCGTCAACCAGATGGTTCATACTCAGATGGTTTGTTGGAGAGACCAATGTTCAAAGGGCAATTCGAATGA 2739 0.4221 MYQESNWMDKDSEDSMPAHGAKGSSEMVSLNVAKKVESSAWEVPRGADAFHATSGVSLFSSSLPVLPHKKFNFTDSEHYGQSADDNFPILDKVHNGDEGQDPLEDITTNAIGNMLPDDEDDLLAGIMDDFDLTRLPNQLEDLDENDLFGSGGGLEMDFELQDGINIGISKISLSDGVPSNGFGHFAIPNGIGAVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRIDIAGKRIKLEPSRPGGARRNNGCGTFKFPIDLKFYENDYSGEGVKSAAFYGTLARQLHVFASSFSCDYLQYILMQQMTELEQDETRTFRHQVGSPIANSPPGNWAHFGSPVEHNPLGSFSKSPGLSYCSPMNTSHLPGLGAILSPHAATSPKIAPIGKDPGRANNANQIFASSGSSQGVAFQHSMSFPEHKVNSSPRPISTFGESKSSSSSVGTLSGPQFLWGSPTPYSEHSNTSAWSSTSGGLPFTSSGQRQGFPYTSRHNSLYNSLPHHHVGSAPSGLPSERHFRYFPESPETSVKSSAAYGSLNHSDGNFFMSMGARGSVGVGVGLPGNMTEISSPNFRMMSLPLHGSLFLGNGMYSGPGATNTEGLAERGRSKRPDNSGSQIDSKKQYQLDLDKIMTGEDTRTTLMIKNIPNKYTSNLLLAAIDENHKGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKWCRPILFHSEGQEIGDQEHFLSSNLNICIRQPDGSYSDGLLERPMFKGQFE 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0098 912 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 364 IPR000504 GO:0003723
Lal22g0098 912 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 358 IPR000504 GO:0003723
Lal22g0098 912 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 272 IPR000504 GO:0003723
Lal22g0098 912 MobiDBLite consensus disorder prediction 1 25 - -
Lal22g0098 912 SUPERFAMILY RNA-binding domain, RBD 758 842 IPR035979 GO:0003676
Lal22g0098 912 Gene3D - 195 289 IPR012677 -
Lal22g0098 912 Gene3D - 290 372 IPR012677 -
Lal22g0098 912 PANTHER PROTEIN MEI2-LIKE 2 18 372 - -
Lal22g0098 912 PANTHER PROTEIN MEI2-LIKE 2 426 902 - -
Lal22g0098 912 PANTHER RNA RECOGNITION MOTIF-CONTAINING 18 372 - -
Lal22g0098 912 PANTHER RNA RECOGNITION MOTIF-CONTAINING 426 902 - -
Lal22g0098 912 CDD RRM2_MEI2_like 290 360 - -
Lal22g0098 912 Pfam RNA recognition motif 2 756 852 IPR007201 -
Lal22g0098 912 SUPERFAMILY RNA-binding domain, RBD 203 366 IPR035979 GO:0003676
Lal22g0098 912 MobiDBLite consensus disorder prediction 714 738 - -
Lal22g0098 912 SMART rrm1_1 758 834 IPR000504 GO:0003723
Lal22g0098 912 SMART rrm1_1 292 360 IPR000504 GO:0003723
Lal22g0098 912 SMART rrm1_1 207 275 IPR000504 GO:0003723
Lal22g0098 912 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 279 IPR000504 GO:0003723
Lal22g0098 912 CDD RRM3_MEI2_like 759 844 IPR034454 -
Lal22g0098 912 MobiDBLite consensus disorder prediction 537 564 - -
Lal22g0098 912 CDD RRM1_MEI2_like 205 281 IPR034453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0098 Lal-Chr22 613100 619592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0098 203 357 Eukaryotic Initiation Factors Gene Family AT1G71770 26.220 8.32e-11 63.9