Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0081 ATGCCTATTACCAACACTTCTCCAACTATGACCAAGTGGTTTTCTACAGTGATAGAAGCAATATCAATATGTAAGGAAGGTTTTTCTTCATCAGTTTTGGCTGGCATTTGTAGTTCTTCACTTGGAGTATTCATGATGGTCTTCGAGAGAGTTCTTTTTGCTGCATTCACTTGCACTCTCGCACTTGGAGGGTCAATAATAGGAACAATTGCAGGAGCCATCAGAGGCCAAACTACAGAAGCTGGTTTTCTTGATGGGGCTGGCAAAGGAGCAGTCACTGGAGCCATTGCAGCTATAGAACTTGTTAATTTTGCTGCTGTTGGTGAACCATTATCGGAGGTTACCATGTTAAGCAGTTTCTTGAATGGTGAAGTCTTTATAGAATGGATATGTCCAGCTGCTGCACGTGCCTATGAGTTGCATATCAACACACCAGAAACAAGTTACAGAGAAGTATCAGATATTTATGATATTTCAGGAGTGAAAGGGATGCCACAGAATTCTATTCTAAATCTTCCTTTTCAGCAATTCAACTCCTGCAAAATGTTGAAATTTCACAATAAGTTAAGCTGCTCAATTTGCTTACAGGATTATGAGGATGGAGAGTTGGTAAGGAAACTTCCGAAGTGTGGCCATCTTTTTCATTTAGAATGCATAGACAAGTGGTTAATCCAACAAGGATCATGTCCTATGTGTAGAACTTATGTTCCTCATCAGATTCATGAATAG 729 0.3978 MPITNTSPTMTKWFSTVIEAISICKEGFSSSVLAGICSSSLGVFMMVFERVLFAAFTCTLALGGSIIGTIAGAIRGQTTEAGFLDGAGKGAVTGAIAAIELVNFAAVGEPLSEVTMLSSFLNGEVFIEWICPAAARAYELHINTPETSYREVSDIYDISGVKGMPQNSILNLPFQQFNSCKMLKFHNKLSCSICLQDYEDGELVRKLPKCGHLFHLECIDKWLIQQGSCPMCRTYVPHQIHE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0081 242 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 18 236 IPR044523 -
Lal22g0081 242 CDD RING-H2_RNF111_like 191 233 - -
Lal22g0081 242 SUPERFAMILY RING/U-box 184 239 - -
Lal22g0081 242 SMART ring_2 191 232 IPR001841 -
Lal22g0081 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
Lal22g0081 242 ProSiteProfiles Zinc finger RING-type profile. 191 233 IPR001841 -
Lal22g0081 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 236 - -
Lal22g0081 242 Pfam Ring finger domain 190 233 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0081 Lal-Chr22 514392 516636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0081 52 236 C3H Transcription Factor Family AT5G66070 36.923 1.74e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0081 - K19041 gmx:100305612 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0081 22 514392 516636 Lal22g0081 22 514392 516636 ECH