Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0065 ATGATACATCCTGTGGAGCCACGTTACCGTGGCGTGAGAAAGAGACCGTGGGGTAAATTTGCAGCGGAGATCAGAGATCCAATTAAGAAAGCTAGGGTATGGCTTGGAACTTTCCATTCCGCTGAACAAGCAGCGCGTGCTTACGACGCTGCTGCTGTAACCCTTCGTGGTCCAAATGCCAAAACCAATTTCCCTATTAACCCTTCACCCCTTTATCACCACCACGCCACCGGCCCCGACTTCGATCACCACCGTTACTTCCCCACCGCCAACAACGCTGCTGGTTTTAATGACCATGTTGTTATTAACCCTCACAGACCAACCTGTAGCGGTATGAGTAGCAACGTTGAGTCCTTCAGCGGCCCTCGTCCTTCATCCGCCGTGCCTGCAACGGTGGCGACAAGAAGGTATCCTCGTACTCCGCCGCTAGTGCCTGAAGATTGCCGTAGTGACTGTGACTCCTCGTCTTCGGTTGTTGATGACGGAGACGACATTGCTTCGTCGTCGTTTAAAGTGCCGTTACCGTTTGATCTTAATGTGCCGCCGTTAGATGTTGATGCTTATGTGGCTAACGGCGATGATGATCTTCACTGCACTGCTCTCTGTCTCTGA 612 0.5196 MIHPVEPRYRGVRKRPWGKFAAEIRDPIKKARVWLGTFHSAEQAARAYDAAAVTLRGPNAKTNFPINPSPLYHHHATGPDFDHHRYFPTANNAAGFNDHVVINPHRPTCSGMSSNVESFSGPRPSSAVPATVATRRYPRTPPLVPEDCRSDCDSSSSVVDDGDDIASSSFKVPLPFDLNVPPLDVDAYVANGDDDLHCTALCL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0065 203 Pfam AP2 domain 7 57 IPR001471 GO:0003700|GO:0006355
Lal22g0065 203 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Lal22g0065 203 MobiDBLite consensus disorder prediction 137 160 - -
Lal22g0065 203 Gene3D AP2/ERF domain 8 67 IPR036955 GO:0003700|GO:0006355
Lal22g0065 203 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Lal22g0065 203 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Lal22g0065 203 PANTHER BNAC01G34730D PROTEIN 6 180 - -
Lal22g0065 203 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Lal22g0065 203 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
Lal22g0065 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 180 - -
Lal22g0065 203 CDD AP2 7 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0065 Lal-Chr22 393726 394337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0065 6 203 AP2-EREBP Transcription Factor Family AT1G50640 58.559 4.64e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal22g0065 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0065 K09286 - gmx:100820249 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0065 22 393726 394337 Lal22g0065 22 393726 394337 ECH
Lal18g1584 18 17409696 17410349 Lal22g0065 22 393726 394337 LSH
Lal22g0065 22 393726 394337 Lal6g0066 6 400589 401212 LSH
Lal3g0857 3 8009899 8010579 Lal22g0065 22 393726 394337 PCT
Lal18g1584 18 17409696 17410349 Lal22g0065 22 393726 394337 PCT
Lal22g0065 22 393726 394337 Lal3g0857 3 8009899 8010579 PCT
Lal22g0065 22 393726 394337 Lal18g1584 18 17409696 17410349 PCT