Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0060 ATGGAATCAGATCTTGGCAAGCTCTTCATTGGAGGGATTTCATGGGATACCAATGAGGAACGTCTCAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCTGTGATCATGAGAGATCGTGCAACAGGGCGCGCTCGTGGTTTCGGTTTTGTTGTCTTTTCTGATCCTGCTGTTGCAGCAATAGTCATTATGGATAAGCACATAATTGATGGTCGCACAGTTGAAGCAAAAAAGGCTGTTCCTAGGGATGACCAGAATGCTATGAATAGACAGCCTGGTGGTGTCATTGGATCTCCTGGCCCCGGACGCACAAAAAAGATTTTTGTCGGAGGTTTACCATCAACAATCACAGAAAGTGAATTTAAGCAGTATTTCGATCAGTTTGGTACAATTACCGATGTCGTGGTAATGTATGATCACAATACTCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGATGCTGTGAGTAGAGTTCTTTATAAAACATTTCATGAACTGAATGGGAAGATGGTCGAGGTCAAGATGGCAGTTCCAAAAGAGCTATCCCCTGGACCAAGCCGAAGCCCATTGATAGGATATAACTTTGGTTTGAATAGGGCGAGTAGCTACCTAAATAGTTATGCGCAGGGTTTTAGTATGAACCCACTAGGAGGCTATGGAGTCGAGATGGATGGTAGGTTTAGTCCACTTTCTAGTGGTAGAAGTGGTTTTAACCAAATTGGTTCTGGTGGTTATGGAATGGGAGTGAATTTCGGTTCAGGATTGAGCCCAATTTATGGAGGGACATCCAACTATGGGAGTGGTCTAGGATATGGTAGGATATTTAGTCCTTTCTACAACAGAAACAACTCAACCAGATACACCACTCCTATTGGCTACAGCGGTGACAACACGAGAAGCGATTCTCTCTTGAACTCAACTTCTCACAATGTATGGGGAAATGGAAGCCTTAGCAATACTACCAATAGCCAAGTCAACCCTGGTGCTTATTTGGGATCTGGAAGTGGGACCTTTGGTGTTTCAATTGGAAATAGTGGCACAAATTGGAGTCCATCAGTTCCATCCCAGGGTGGAGGTGCTGCTGCTCCTTCAGGCTTTACTAATTGGAGTAATGTTTATGAAGGTGGAGGAGATAGTAACAAAGGATTAGGAGGGGGAGGGTATGGAAGAAATGGCAACACAAATGTGACTCAATCCTCTTCCTTTGCTGCACCAGCTGGTGGTTATGAAGCATCCTATCGGGATTTGTACCGCAATGGTTCGGTTTACAGTGACTCGACATGGCGATCTGCTGCTTCTGAGATAGATGGTTCTAGCTCTTTTGGTTATGGACTTGGTGGTATAGCTTCAGATGATCCAGTAAAGACTTCTGAGGGTTTTATTGGAAACTACAATGTAACAAGTAGACAACCTAATAGAGGAATTGCTGCGTAG 1449 0.4382 MESDLGKLFIGGISWDTNEERLKEYFGKYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAAIVIMDKHIIDGRTVEAKKAVPRDDQNAMNRQPGGVIGSPGPGRTKKIFVGGLPSTITESEFKQYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVSRVLYKTFHELNGKMVEVKMAVPKELSPGPSRSPLIGYNFGLNRASSYLNSYAQGFSMNPLGGYGVEMDGRFSPLSSGRSGFNQIGSGGYGMGVNFGSGLSPIYGGTSNYGSGLGYGRIFSPFYNRNNSTRYTTPIGYSGDNTRSDSLLNSTSHNVWGNGSLSNTTNSQVNPGAYLGSGSGTFGVSIGNSGTNWSPSVPSQGGGAAAPSGFTNWSNVYEGGGDSNKGLGGGGYGRNGNTNVTQSSSFAAPAGGYEASYRDLYRNGSVYSDSTWRSAASEIDGSSSFGYGLGGIASDDPVKTSEGFIGNYNVTSRQPNRGIAA 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0060 482 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Lal22g0060 482 Gene3D - 6 88 IPR012677 -
Lal22g0060 482 Gene3D - 103 189 IPR012677 -
Lal22g0060 482 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 482 - -
Lal22g0060 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lal22g0060 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Lal22g0060 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lal22g0060 482 SUPERFAMILY RNA-binding domain, RBD 105 290 IPR035979 GO:0003676
Lal22g0060 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal22g0060 482 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 482 - -
Lal22g0060 482 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lal22g0060 482 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Lal22g0060 482 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal22g0060 482 SMART rrm1_1 107 179 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0060 Lal-Chr22 366212 369838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0060 8 262 Eukaryotic Initiation Factors Gene Family AT1G71770 28.159 1.18e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0060 K14411 - gmx:100805131 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0060 22 366212 369838 Lal22g0060 22 366212 369838 ECH
Lal18g1601 18 17497829 17501717 Lal22g0060 22 366212 369838 LSH
Lal22g0060 22 366212 369838 Lal6g0049 6 308575 311123 LSH
Lal11g0696 11 6615069 6622924 Lal22g0060 22 366212 369838 PCT
Lal22g0060 22 366212 369838 Lal11g0696 11 6615069 6622924 PCT