Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0046 ATGGCGGACTCGGACAACGAGTCAGGAGGTCAGAACGTTGGAAATGCGCAGGGAGAGTTATCGTTGCGAGAACAAGACCGTTTCCTTCCGATTGCGAACGTCAGCAGGATCATGAAGAAAGCTTTACCAGCAAACGCTAAGATATCGAAGGACGCAAAGGAAACCGTTCAAGAGTGCGTATCGGAGTTCATAAGCTTTATAACCGGCGAAGCCTCCGACAAGTGCCAGAGGGAGAAGCGTAAGACGATAAACGGCGACGATTTGCTGTGGGCGATGACAACGCTAGGGTTCGAGGAGTACGTGGAGCCGCTGAAGGTGTACCTACAAAGGTTCAGGGAAATGGAAGGGGAGAAGACGGTGACGGTGACGGCGCGTGAGAAGGAAGGGAGTGTTGGTAGTGGTTATGAGTACGGAGGTGGAAATGGAATGGGGATGATGATGCATCATGAGGGACACGTGTACGGTTCTGGTGGTAGTGGATCTGTGGTTATTATGGGTAATAAGAGTGGGCCCAGTTACCCTGGTGCTGGATCTAATGCAGGTAGACCCAGATAG 555 0.5171 MADSDNESGGQNVGNAQGELSLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKTVTVTAREKEGSVGSGYEYGGGNGMGMMMHHEGHVYGSGGSGSVVIMGNKSGPSYPGAGSNAGRPR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0046 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Lal22g0046 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal22g0046 184 MobiDBLite consensus disorder prediction 1 19 - -
Lal22g0046 184 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 149 - -
Lal22g0046 184 MobiDBLite consensus disorder prediction 1 21 - -
Lal22g0046 184 Gene3D Histone, subunit A 17 135 IPR009072 GO:0046982
Lal22g0046 184 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Lal22g0046 184 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Lal22g0046 184 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Lal22g0046 184 SUPERFAMILY Histone-fold 25 124 IPR009072 GO:0046982
Lal22g0046 184 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0046 Lal-Chr22 279744 280298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0046 1 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.885 2.83e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal22g0046 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0046 K08065 - gmx:100813169 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0046 22 279744 280298 Lal22g0046 22 279744 280298 ECH