Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0029 ATGAAGTGTGTGTGTCTTTTGCTTGTAGATAAAATGCAATCAGATAATGGCAAGTTATTCATTGGTGGAATATCATGGGACACCAATGAAGAGCGACTAAGGGAGTATTTCAGTAACTACGGTGAGGTTGTGGAATCAGTGATCATGAAAGATCGGACAACTGGTAGAGCCCGTGGGTTTGGTTTTGTTCTTTTTTCTGATCCAGCTGTTGCTGATGTAGTTATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCCAGGGATGACCAAAACATAGTGAGTAGGAACAATGGCAGCATCATCCATGGTTCTCCTGGTCCAGGCTGCACAAGAAAGATGTTTGTTGGAGGTTTAGCATCAACTGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGAACTATTACAGATGTTGTGGTCATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTACGACTCCGAGAATGCTGTTGAGAAGGTCTTACTTAATACATTTCATGAACTGAATGGGAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAAGAGTTATCGCCTGGACCAAGCCGCAGCCCAATTGGTGGATATAACTATGGTCTGACTAGGGTCAATAGTTTCTTAAATGGCTTCAATCAAGCGTATCCTCCTAGTACTGTTGGAGGCTATGGACTTCGGGTGGATGGTAGATTCAGCCCCGTTGCTAGTGGTCGGAGTGGATTTGCTGCTCCATTTGGACCTGGTTATGGAATGGGTATGAATTTTGAGCCTGGCTTGAGTGCTGCTGGATTTGGAGGGAATGCAAATTTCAGTGGTAATCTTAGTTATGGTCGGGGATTAAATCCTTATTATATTGGCAGCTCCAATAGCTTTGGCAGTCCTGTTGGATATGACAGTGGTAACGGAGGAAGCAATTCTTTCTTCAGCTCTGTGACTCGAAATTTGTGGGGAAACGGTGGCCTTAGTTATGGAACAACTTCTGCAAACTCCAATGCATACATTGGATCAGGTAGTGGGAGTGTTCTTAGAGGAAACACGTTCGGCAGTACTGGAGTCAATTGGGGTTCTTCAGCCGCAATTTCTGGGCCGGGGGGAGGGAACAATGTGTCACAGAGTAGTGGCAACCTTGGTTATGGATGTGGTGCCGACAACAGTTATGGTTTGGGTAATGGAGGGTACGAAAGAATCAATGCTCCCATTATCACCCCAACATCATACTCTCCATCAAATGTTGGTGTTGATGGGGCTTTTGCTGAATTTTACAATAATAGTTCTGTTTATGGGGACCCAACTTGGCGATCTTCAAATTCTGAACGAGACGGATCTGGTCCCTTCGGTTATGGACTTGGCAGTGCAGCTTCAGATGTTTCTGCTAAAAGTCCTCTTGGTTATGTTGGCGGTTATACTGTTAATCAGAGGCAGCCAAATAGGGGAATTGCTACATAG 1485 0.4438 MKCVCLLLVDKMQSDNGKLFIGGISWDTNEERLREYFSNYGEVVESVIMKDRTTGRARGFGFVLFSDPAVADVVIKEKHNIDGRMVEAKKAVPRDDQNIVSRNNGSIIHGSPGPGCTRKMFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSENAVEKVLLNTFHELNGKMVEVKRAVPKELSPGPSRSPIGGYNYGLTRVNSFLNGFNQAYPPSTVGGYGLRVDGRFSPVASGRSGFAAPFGPGYGMGMNFEPGLSAAGFGGNANFSGNLSYGRGLNPYYIGSSNSFGSPVGYDSGNGGSNSFFSSVTRNLWGNGGLSYGTTSANSNAYIGSGSGSVLRGNTFGSTGVNWGSSAAISGPGGGNNVSQSSGNLGYGCGADNSYGLGNGGYERINAPIITPTSYSPSNVGVDGAFAEFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGSAASDVSAKSPLGYVGGYTVNQRQPNRGIAT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0029 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Lal22g0029 494 Gene3D - 115 201 IPR012677 -
Lal22g0029 494 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 12 494 - -
Lal22g0029 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 80 IPR000504 GO:0003723
Lal22g0029 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 177 IPR000504 GO:0003723
Lal22g0029 494 CDD RRM2_DAZAP1 117 195 IPR034131 GO:0003723
Lal22g0029 494 SUPERFAMILY RNA-binding domain, RBD 117 214 IPR035979 GO:0003676
Lal22g0029 494 CDD RRM1_hnRNPA_hnRNPD_like 19 89 - -
Lal22g0029 494 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 12 494 - -
Lal22g0029 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 93 IPR000504 GO:0003723
Lal22g0029 494 SUPERFAMILY RNA-binding domain, RBD 11 115 IPR035979 GO:0003676
Lal22g0029 494 SMART rrm1_1 119 191 IPR000504 GO:0003723
Lal22g0029 494 SMART rrm1_1 18 89 IPR000504 GO:0003723
Lal22g0029 494 Gene3D - 15 99 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0029 Lal-Chr22 215960 219444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0029 10 279 Eukaryotic Initiation Factors Gene Family AT2G23350 27.719 1.20e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0029 K14411 - gmx:100795907 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1647 18 17807028 17813774 Lal22g0029 22 215960 219444 LSH