Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1381 ATGAGAGGAAGGAGTTACAGCCCATCTCCGAGTCCACCACCACCACCACCACCACCACCACCGTCACATACACATAGAGATAGAGATAGAAGGGGTTACAGCAGTAGAAGAGGAAGTGGTAGAAGTCCAAGTCTACCACCACCACCACCACCACCATCACATAGAGATAGAAGAGGTTACAGCAGAGACAGAGATAGAAGGGATAGAGGGTACAGCAGAGACATAGATCTTCCAACCAGTCTTCTTGTTCGTAACCTCAGACATGATTGCAGGCCTGAGGATCTCCGAAGACCCTTTTCACAATTCGGTGCTCTTAAAGACATTTACCTTCCTAAGGATTACTACACTGGAGAACCCCGCGGTTTCGGATTTGTCCAGTTTGTGGATCCTGCTGATGCAGCCGATGCTAAACATCACATGGATGGTCAGGTTCTTCTTGGTCGTGAGTTGACTGTTGTCTTTGCTGAGGAGAATAGGAAGAAGCCAACTGAGATGAGGACCAGAGAAAGAGGGGGTCGATTTAATGATCGAAGAAGGTCTCCTCCTCGCCACTCTCGATCACCCCGTTACTCTCGATCTCCACCACCACGTCATAGATCTCGCAGCCATCACTATTATTCTCCTCCTCCTAAGCAACAGGAATATTCAAGGTCTGCCTCACCTGAGGAAAGAAGATACAGTCGAGAAAGATCATATTCACCGCAGAAAAGAGAGAGATCATACTCACGCTCTCCGCCACCCTTCAATGGCAGTGGCTCAAGGAACCGAAGCCAGAGTCCGGCAAAGGGTCCCCCAAGCCGGAGCAGAAGTCCCACCCCAAACCGGGAATCAAGCCATGGTGCTAGGTCTCCCAGTCCGTGA 861 0.5029 MRGRSYSPSPSPPPPPPPPPPSHTHRDRDRRGYSSRRGSGRSPSLPPPPPPPSHRDRRGYSRDRDRRDRGYSRDIDLPTSLLVRNLRHDCRPEDLRRPFSQFGALKDIYLPKDYYTGEPRGFGFVQFVDPADAADAKHHMDGQVLLGRELTVVFAEENRKKPTEMRTRERGGRFNDRRRSPPRHSRSPRYSRSPPPRHRSRSHHYYSPPPKQQEYSRSASPEERRYSRERSYSPQKRERSYSRSPPPFNGSGSRNRSQSPAKGPPSRSRSPTPNRESSHGARSPSP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1381 286 MobiDBLite consensus disorder prediction 55 73 - -
Lal21g1381 286 MobiDBLite consensus disorder prediction 238 286 - -
Lal21g1381 286 SUPERFAMILY RNA-binding domain, RBD 79 183 IPR035979 GO:0003676
Lal21g1381 286 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 40 270 - -
Lal21g1381 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 150 IPR000504 GO:0003723
Lal21g1381 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Lal21g1381 286 MobiDBLite consensus disorder prediction 217 237 - -
Lal21g1381 286 MobiDBLite consensus disorder prediction 179 205 - -
Lal21g1381 286 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 40 270 - -
Lal21g1381 286 Gene3D - 22 171 IPR012677 -
Lal21g1381 286 MobiDBLite consensus disorder prediction 1 73 - -
Lal21g1381 286 MobiDBLite consensus disorder prediction 7 21 - -
Lal21g1381 286 SMART rrm1_1 80 153 IPR000504 GO:0003723
Lal21g1381 286 MobiDBLite consensus disorder prediction 157 286 - -
Lal21g1381 286 MobiDBLite consensus disorder prediction 22 36 - -
Lal21g1381 286 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1381 Lal-Chr21 17165574 17168686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1381 38 142 Eukaryotic Initiation Factors Gene Family AT3G11400 35.238 1.26e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1381 K12900 - gmx:100775883 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1381 21 17165574 17168686 Lal17g1691 17 18068061 18070450 LSH