Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1370 ATGAGGACCAATAGAAAGCCATATATTTGTGTTCTGATTGTTTCTTTCTTTGTTTCAGGATCTGAGGCAACAATCATAATGGCATTTTGTAACAAGCTTGGAAATCTCTTGAGGCAAGGTGCTGCCCAGAGTAGACAACAAAACATGCTTAACTATATTCGCATGATGTCTTCTAGCAAGCTTTTTGTTGGAGGGCTTTCATATGGTGTTGATGACCAGTCTCTTAGGGATGCATTTGCCAGCTTTGGAGATGTTGTTGAGGCAAAGGTTATCACTGATAGAGACACTGGACGATCGAGGGGATTTGGATTTGTCAACTATGACAGTGAAGACTCTGCAAATACAGCACAATCTGCCATGGATGGGCAGGATCTAAATGGGCGCAACATTCGGGTATCCTTTGCGAATGAAAGGCCACCGGGACCTCGATCTCCTGGTGGTGGTGGCGGCTATGGAGGCGGTGGTGGCTATGGAGGCGGTGGTGGCTATGGAGGTGGTGGTGGTGGTGGTTATCGCAGAGGTGGAGGTGGTGGAGGGTTTGGCGAGGAAGGCTATTAA 558 0.4767 MRTNRKPYICVLIVSFFVSGSEATIIMAFCNKLGNLLRQGAAQSRQQNMLNYIRMMSSSKLFVGGLSYGVDDQSLRDAFASFGDVVEAKVITDRDTGRSRGFGFVNYDSEDSANTAQSAMDGQDLNGRNIRVSFANERPPGPRSPGGGGGYGGGGGYGGGGGYGGGGGGGYRRGGGGGGFGEEGY 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1370 185 Gene3D - 37 184 IPR012677 -
Lal21g1370 185 MobiDBLite consensus disorder prediction 133 185 - -
Lal21g1370 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 131 IPR000504 GO:0003723
Lal21g1370 185 SUPERFAMILY RNA-binding domain, RBD 55 169 IPR035979 GO:0003676
Lal21g1370 185 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 27 184 - -
Lal21g1370 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 137 IPR000504 GO:0003723
Lal21g1370 185 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 184 - -
Lal21g1370 185 SMART rrm1_1 60 133 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1370 Lal-Chr21 17082645 17084443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1370 61 138 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 8.04e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1370 - - lang:109344110 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1659 4 20635899 20637973 Lal21g1370 21 17082645 17084443 LSH