Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1365 ATGGTATTCATTAAGGCTCAGAAGTCAAGGGCATACTTCAAGAGATATCAAGTGAAGTTTAAGAGAAGAAGGGAGGGAAAAACTGATTACAGGGCCAGGATTAGGTTGATTAATCAGGACAAGAATAAGTACAACACCCCCAAGTACCGATTTGTTGTTCGATTTACCAACAAGGACATCGTTGCGCAAATAACATCTGCTAGTATTGCTGGTGATAATGTTCTTGCTGCAGCATATGCACATGAACTGCCTCACTATGGTCTTCAAGTAGGCCTCACAAACTATGCTGCAGCTTATTGCACTGGGCTACTTCTTGCCCGTCGAGTCCTTAAGACACTTGAATTGGATGAGGAATATGAGGGGAATGTAGAGGCTTCTGGAGAAGATTTTTCAGTTGAACCTGCTGAAACCAGGAGACCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACCACAACTGGAAATCGAGTTTTTGGTGCCCTTAAGGGAGCTTTGGATGGGGGTTTGGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTTGATAAGGAGAAGAAGGAGCTGGATCCTGAGACCTTGATCGAAGATGAACCTGAGAAATATCAAACACACTTTAGTGAATATATCAAGCGAGGAATAGATGCTGATGGTCTTGAGGCGCTGTACAAAAAGGTTCATGCAGCCATTCGTGCAGACCCTACTGCAAAGAAGTCAAAGAAGCAGCCACCTAAAGTACACAAGAGATACAACCTGAAGAAGCTTACCTATGATGAGAGGAAGAACAAGTTGATTGCACGCTTGCAGGCTCTGAATTCTGCCGCTGGAGTTGGTGACGATGATGATGAAGATGATGAGTGA 861 0.439 MVFIKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQITSASIAGDNVLAAAYAHELPHYGLQVGLTNYAAAYCTGLLLARRVLKTLELDEEYEGNVEASGEDFSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDPETLIEDEPEKYQTHFSEYIKRGIDADGLEALYKKVHAAIRADPTAKKSKKQPPKVHKRYNLKKLTYDERKNKLIARLQALNSAAGVGDDDDEDDE 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1365 286 SUPERFAMILY Translational machinery components 11 235 - -
Lal21g1365 286 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal21g1365 286 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal21g1365 286 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal21g1365 286 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal21g1365 286 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal21g1365 286 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 283 - -
Lal21g1365 286 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal21g1365 286 Gene3D - 1 275 - -
Lal21g1365 286 CDD Ribosomal_L18_L5e 41 170 - -
Lal21g1365 286 Pfam Ribosomal L18 C-terminal region 219 272 IPR025607 -
Lal21g1365 286 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 283 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal21g1365 286 MobiDBLite consensus disorder prediction 233 253 - -
Lal21g1365 286 Hamap 50S ribosomal protein L18 [rplR]. 14 230 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1365 Lal-Chr21 17028466 17031057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1365 1 276 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 77.740 1.28e-166 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1365 K02932 - gmx:100805868 478.789