Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1343 ATGATGGATGTTGCTGAGCTAGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGCAACTATCTGCAATATATTGCAAAATATTGTCAATATTTCCTTCTTTAGAAGAAGCTAGGCCTAGGAGCAAATCTGGAATTCAAGCATTATGTTCATTGCATGTAGCTTTAGAAAAGGCGAAGAATGTTCTTCGACACTGTTCAGACTGCAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGACTAAGTGTGCTCTTGAAGATAGTCTTAAAATGGTGGAAGATATTGTTCCGCAATCTATTGGGTGTCAGATTGACGACATTGTGAAGGAACTAGCAAGTATGATATTTACACTCGACCCATCAGAGAAGCAAATCGGGGATGATTTAATTGCATTGCTTCAGAAGGGGAGACAGTTTAACGACTGTAGCGACAGTAGTGAACTAGAATGTTTTCATCAGGCTGCTACTAGACTTGGAATTATATCTTCAAGAGCCGCCCTCACTGAAAGAAGAGATCTCAAAAAACTCATAGAAAGGGCTCGGTCTGAGGAAGACAAGCGGAAAGAATCAATTATTGCATATCTTTTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTTTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCGACTGTTCAGAAATCTCAAGAAGATGGTGTTCCTGGCGATAATTGCCAGACCTTTAACCGACAGCTTTCAAAACTTAGTTCGTTTAATTTGAAGGCAAATAGTCGGAAATCCGGGCAGATGAACCTTCCACCTGAAGAGTTAAGATGTCCAATATCTCTTCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGCCAAACATATGAAAGGGTTTGTATAGAAAAGTGGTTCAGGGATGGGCACAACACGTGTCCAAAGACTCAACAGAAACTCTCACATCTTTCTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTCAACAGAACGGAGTTCCTATTCCTCAAGGCCCTCCTCAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCGGATTCCGAATCCACAAATTCAAGATCCGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTCTAGAAGAGAGTGCTATCTCCGAGAAAACCGAGACGAATGCAACTGAAAGCTTGTCTACAGAAGAGGAAGATACTGACCAGTATCTAAATTATCTTCAAGTCTTGACCGAAGGGAATGATTGGAAGAAGAAGTGTGAAGTGGTAGAGCGGTTAAGGCGGTTGCTGCGGGATGACGAAGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTTTGAAGTTTCTACAGTCAGCTGTACATGAAGGGCATTTGATGGCTCGGGAAAGTGGAGCTATGGCTCTCTTTAACCTTGCTGTGAATAACAACAGAAATAAGGAAACTATGATATCAGCAGGAGTCTTATCGTTGTTGGAGGAAATGATCTCAAACACTAGTTCTTATGGTTGTGCAACAGCTCTCTATCTGAATCTTTCTTGCCTCGAAGATGCTAAGCCTATGATCGGATCGAGCCGGGCTGTCCAGTTCCTAATTCAGGTTCTTCAAACCAACACTGATATCCAATGCAAGCTAGATTCTCTCCATGCTCTCTATAACCTCTCTACCATGCCCTCCAATATCCCATACCTCATTTCATCTGGCATCATTAATACCCTACAATCAGTTCTTGTAGGGCTGAGTGATTCATTGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCTATTTCTCAAGTTGGAAGAGAGGAAATGATGTTGGCTCCCGAACTCATAAGCGCGTTGGCTTCAATTCTGGATACCGGAGAGCTCCAAGAGCAGGAGCAAGCTGTTTCTTGTCTCCTAATTTTGTGTAACAAGACCGACAAATGTATCGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCGATATCAGTGAATGGCACCCCACGAGGAAGAGAAAAATCTCAGAAACTCTTGATGCTATTCCGAGAGCAGCGCCAACGTGCACGCGACCACAGAGACCATACACATGCAGAGACACTTCAACGCGCCGAGACACTTCAACATCCACCGGAGGCTAGTAATTTGTCTATGGCTCCTCCCGAAGTGAAACCACTTTGCAAGTCGATATCTAGAAGAAAGCCTTGCTTAAATGCTTCTATCATTCATGTTCTTCACATGAATGGTGCTTATTTTCTGGTTTCCAAAGTGAAGAAGAGACGTACAGACATGTTATTTGGTTTGATCTTTAAGTTGGTGATTCAAGTGATGGCATCATCAGAAAAATTGTTTGGAATACCAGGAGATGGTAGATGTTTATTTAGATCAGTTGTCTATGGTGCATGTCTCAGAACAGGAAAGCCATCTCCAAGTATCAACAAGCAAAAGGAACTTGCAGATGAGCTCAGAGCAAAAGTTGTGGATGAATTCATCAAGAGGAGAGAAGATACTGAGTGGTTTGTTGAGGGTGATTTTGAAACCTATACAGTACAAATGAGAAAGCCTCACATATGGGGAGGAGAACCTGAACTTTTCATGTGCTCACATGTTTTACAGTTAAGTCAATTTTCATTTGCAAAACTTTCATGCAAATGTGTCATGGACAATGTTAAAGATCCACTTAAGATGCCTATAACAGTGTTCATGCAGCATAAGAATTCAAGAAGCCTTAAAGTTATAGCTGAATATGGTGAAGAGTATGATAAGGATAACCCTATTCAAGTCATATATCATGGTTATGGCCACTATGATGTGTTGAAGGGTTCAAATGATTATTATGCAGTGTGA 2916 0.4105 MMDVAELEENLFAASDAKLHGEMCKQLSAIYCKILSIFPSLEEARPRSKSGIQALCSLHVALEKAKNVLRHCSDCSKLYLAITGDSVLLKFEKTKCALEDSLKMVEDIVPQSIGCQIDDIVKELASMIFTLDPSEKQIGDDLIALLQKGRQFNDCSDSSELECFHQAATRLGIISSRAALTERRDLKKLIERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQKSQEDGVPGDNCQTFNRQLSKLSSFNLKANSRKSGQMNLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCQQNGVPIPQGPPQSLDFNYWRLALSDSESTNSRSVNSVSSCKLKGVKVVPLEESAISEKTETNATESLSTEEEDTDQYLNYLQVLTEGNDWKKKCEVVERLRRLLRDDEEARIFMGANGFVEALLKFLQSAVHEGHLMARESGAMALFNLAVNNNRNKETMISAGVLSLLEEMISNTSSYGCATALYLNLSCLEDAKPMIGSSRAVQFLIQVLQTNTDIQCKLDSLHALYNLSTMPSNIPYLISSGIINTLQSVLVGLSDSLWTEKCIAVLINLAISQVGREEMMLAPELISALASILDTGELQEQEQAVSCLLILCNKTDKCIEMVLQEGVIPALVSISVNGTPRGREKSQKLLMLFREQRQRARDHRDHTHAETLQRAETLQHPPEASNLSMAPPEVKPLCKSISRRKPCLNASIIHVLHMNGAYFLVSKVKKRRTDMLFGLIFKLVIQVMASSEKLFGIPGDGRCLFRSVVYGACLRTGKPSPSINKQKELADELRAKVVDEFIKRREDTEWFVEGDFETYTVQMRKPHIWGGEPELFMCSHVLQLSQFSFAKLSCKCVMDNVKDPLKMPITVFMQHKNSRSLKVIAEYGEEYDKDNPIQVIYHGYGHYDVLKGSNDYYAV 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1343 971 SUPERFAMILY ARM repeat 429 698 IPR016024 -
Lal21g1343 971 Pfam OTU-like cysteine protease 810 895 IPR003323 -
Lal21g1343 971 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Lal21g1343 971 MobiDBLite consensus disorder prediction 223 247 - -
Lal21g1343 971 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Lal21g1343 971 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Lal21g1343 971 SUPERFAMILY Cysteine proteinases 803 964 IPR038765 -
Lal21g1343 971 MobiDBLite consensus disorder prediction 712 742 - -
Lal21g1343 971 ProSiteProfiles OTU domain profile. 804 965 IPR003323 -
Lal21g1343 971 MobiDBLite consensus disorder prediction 225 247 - -
Lal21g1343 971 CDD RING-Ubox_PUB 284 326 IPR045210 -
Lal21g1343 971 Coils Coil 176 196 - -
Lal21g1343 971 SMART arm_5 455 499 IPR000225 GO:0005515
Lal21g1343 971 SMART arm_5 540 581 IPR000225 GO:0005515
Lal21g1343 971 SMART arm_5 501 539 IPR000225 GO:0005515
Lal21g1343 971 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 353 IPR013083 -
Lal21g1343 971 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 722 - -
Lal21g1343 971 SUPERFAMILY RING/U-box 279 355 - -
Lal21g1343 971 Pfam Kinesin-associated protein (KAP) 462 681 - -
Lal21g1343 971 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Lal21g1343 971 PANTHER U BOX DOMAIN-CONTAINING 2 722 - -
Lal21g1343 971 Gene3D - 409 725 IPR011989 -
Lal21g1343 971 Gene3D - 797 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1343 Lal-Chr21 16814733 16824771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1343 2 757 U-box Gene Family AT1G24330 67.016 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1343 - - gmx:100804344 1176.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1343 21 16814733 16824771 Lal17g1662 17 17855459 17862227 LSH
Lal21g1343 21 16814733 16824771 Lal7g0609 7 13108253 13113726 PCT
Lal7g0609 7 13108253 13113726 Lal21g1343 21 16814733 16824771 PCT