Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1308 ATGAACACTTTCAACCAACCCAGTAGCGGTGTCACCACGCGCCACCACAACTTCAATTCCCACCATCAACCACCACAACAACCACCACCTTCTCACGGTGCTCAAACCTCTCATCCCCCACACCACTCTTTGCACCACTGGAATCCTGGTGTCAACCCACCGGACAAGACCTCCACCACCCTCCGCCGTCCAAATTTCGTCATCACCCTCCGCACCGGCCGTCGCTCATTCCGGCGAGATGAAATCATGGCGCTAATCTCCGAATGCGACTCGAAGCCGGAGTTCAAGAAATTTCCCGTCGGTGACCGTATCGCCGGCAAGATCGGTTTCCGGCAGTGGTGCGACGCGTTAGACGCCGTCGTTTGGTTCTGGAAAACTCGCCTGAATGAAATTCATGATCTGATGCCAGAACTCACTTCATATGTTAAAGTACCTTCAGATATGTATGAACTAGAACGTAGATTGAAAGCCCTATTTTCTTACCACGTGAAGTGTTTGATGAATGAAGGGAAAGAGGTTAAACGATTGAACGTTGAAATCGAACAATTATCGAAAGAGATTGATAGTATTTGTAAGGTATTGAGTAAACCGTTGCCAATTCCGGTTTATAATCAGAGAGTGGAGAAGAAGAAAGGACTAATAGCTGAGAAAAAACTAGTTGATAAGAGAATAAGGGAATTTAAGAATGCAATGGAGTGTTTGGTTAAGAAATTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAGAATAATAAGGTTTTGAAGGATGAGGAAAGTGTTGTTTCTGTGTTTAAAATTGAAGGAAAATTGGATTGGAAGAAGGTTCATTGCATGATCATGAGAGAAAGGAAGAGACTTGAACAAGGATTACCAATATATGCTTATAGAAGTGATATTATTCACCAAGTTCATTCTCATCAGGTAACGGTATTAATTGGAGAGACTGGTTCTGGAAAGAGTACACAGTTGGTACAGTTCCTAGCTGATTCGGGTATTAGTGCTAATGAGTCCATTGTATGCACTCAACCTCGTAAAATTGCTTCCAAATCAGTGTCTGAAAGGGTACAGGAAGAGAGCAGTGGATGTTATGGAGACAATACTATCAAGAGTTATTCTACCTTTTCATCTTCACACCGTTTTGATTCCAGAATTACATTCATGACAGACAACTGTTTATTGCAGCACTATATGGATGACGAGAATCTGTTTGGGGTCTCATGCATCATAATTGACGAGGCTCATGAAAGGAGCTTAAATACTGATATACTGTTGGCATTGATCAAGAGTTTACTCAGTCGGAGGGTTGACATGCGGCTTATCATTATGTCAGCTACAGCTGATGCAGAGCAGCTATCTAATTATTTCTATGGATGTGGAATTCTTCATGTGCTTGGGAGAAACTTTCCAGTGGATGTGAGATATGTTCCTTCTGACAACACAGAACATTCTGGTTCTGCTGTTATTGCCTCATATGTCTCTGATGTTGTCAGAATAGCAACTGAGATTCACAAAACAGAGAAAGAGGGATCTATCCTTGCCTTTCTGACCTCACAGGTAGAAGTAGAGTGGGCCTGTGATAAGTTTAGAGATACCTCTGCAGTTGCTTTGCCATTACATGGAAAACTTTCGTCTGAAGAGCAATTTCATGTCTTCCAGAACTACTCTGGAAAAAGAAAAGTGATATTTGCAACAAATCTTGCAGAGACATCACTTACGATTCCTGGTGTTAAGTATGTGATAGATTCTGGGTTTGTTAAAGACTGCCGGTTTGATCCTAGCAGTGGGATGAGTGTACTTAAGGTTTGCCGGATCAGCCAGAGTTCTGCTCTTCAACGGGCTGGTCGTGCTGGGCGAACTGAGCCTGGTAGGTGCTATAGACTGTACTCAGAAGCTGATTTTCAGTCTATGGAACCAACCCAAGAACCTGAGATTCGGCGAGTTCAACTTGGTGTGGCAGTTTTGAGGATTCTTGCTTTAGGAGTGAAGAATGTGCAGGAATTTGATTTTGTGGATGCTCCAAGTTCTAGATCTATTGAGATGGCGATCAAGAATCTTATTCAACTAGGAGTCATTAGACTGAATAAAAATCTTCATGAATTAACACATGAAGGCAGATACTTGGTAAGAATGGGAGTTGAACCTAGGCTTGGTAAACTCATTCTTGGCTGTTCCCGTTATGGTATGGGTAGAGAAGGTGTTGTCCTTGCTGCTTTGATGGCCAATGCCAGCACAATATTCTGCAGAGTTGGTAAAGAAGATGATAAGCAAAGATCCGATTGTCATAAAGTTCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTACTCTCAGTGTACAAGGAATGGGAAGCTCTGCCTCGAGACAGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCAATGAGGAGATGCCAAGACACTGTTGTGGAGCTAGAATCTTGTCTTGAACGTGAACTTTGCCTTGTTACTCCACAGTACTGGCAATGGAACCCTTCTAAGCCCTCTGATTATGATGAGCATCTGAAGAAGATTATACTAGCTTCACTTGCCGAAAATGTAGCCATGTACTCTGGATGCGACCAACTTGGTTATGAAGTGGCACAAACTGGGCAACTTGTTCAGCTACATCCATCTTGTTCATTACGTGTATATGCTCAGAAACCTAGTTGGGTGGTTTTTGGGGAGCTTCTTTCTGTTTCTAATCAATATCTGGCATGTGTAACTGCTTTTGACTTTGACTCATTGTACAACCTCTCCCCTCCTCCCCCTTTTGATGTATCCAAGATGGAAAAGAAGAAGTTACAGATGAGGAGGTTGACTGGTTTAGGATCTATTCTTCTCAAGCGACTTTGTGGGAAAGGTAACAGTAGTGTGCTTGGTCTGGTATCTCGGATAAGGAAAGCTTGTAGGGATGATCGTATTGTTGTTGAAGTCAACGTTGGCCAGAATGACATTCAGTTATATGCCACTTCACATGATATGGAAACCGCCCTTGGGTTACTTAATGATGTTTTAGAATATGAGAAAAAGTTGCTTTATACTGAATGTGTGGAAAAATGTTTGTATCATGGTTTCTCTCCTTCTGTAGCTTTGTTTGGGTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAGCGTTTCTTGTGTATTGATGTGTCACATCCAAACATAAATGCAATTGATGACACGCAGCTCTTGATGTTTTTCGAGAACACCTCTGGTGATATCTGTTCTGTGCAGAAGTTCACATACATGGCGAAGGATGCTGAAGAGAGAGAAAAGTGGGTCAAGATAACATTTCTCTCCCCTGATGCTGCCGAAAAAGCTGCTGATCTAGATGGAGTGGAGTTTTGTGGCTTCCCCTTGAAAGTTGTCCCATCACGAATTGCTGTTGGAGGAGATAAAACACTTTCATTTCCTGCTGTTAAAGCAAAAATTAGTTGGCTTCGTAGGCCTAGCAAGGGGTTTGGCATTCTTAAATGTGACGTAAATGATGTCAATTTCATCTTGGGAGATTTCTATAACCTTGCGATTGGAGGGAGGTATGTTCGATGTGACGCTAGCACAAAGAGTGCAGACTGTATTACAATAGGTGGGATTGACAAAGAGCTCTCTGAAAGTGAAATTTTAGATGAACTAAAAGCTGCTACAAGTAGAAGGATTCTGGATTTTTTCCTACTAAGAGGAGATGCCATTCTAAATCCACCATGCAGTGTCTTTGAAGAGGCACTTCTAAAAGAAATTTCCCCCTTTATGCCCAACATAAACCCACACATTAGTTCTTGCAGAGTTCAGGTGTTCCCATCTGAGCCAAGGGACACATTCATGAAAGCTTTAATCACCTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGAAAAGTGTTGCCTGTATGTTTTACATGGCAGAAAATAAAGTGTGAGAGGATGTTCCATAGCTCCTTGGTACTTCCTGTACCAGTGTTTAGCGTAATTAAGGAAGAACTGGAGAAAGTACTTTCAAGGTTCAAAAATGTTAAGGGTCTCGAGTTGATCGTAGACAGATTTACTAATGGTTCCCGCCGAGTGAGAATAACGGCCAATGCCACAAAGACAGTGGCAGAAGTTAGGAGACAACTGGAAGAACTATCAAGAGGGAAAACCGTTGAAGATGACAACCTCACCCCTATAGTTTTACAGCACATGTTGACCAAAGACGGCTTTAATGTTAAAAACTCTTTACAGGAAGAGACAGGAACTTATATTTTTCTTGACAAGCACAACCTGAGTATACAAGTGTTTGGTCCCCCAGACAAGGTTGCTTTTGCAAAGCAGAAGCTGGTTCAATTGCTACTCTCTCTCCATGAAAGGAAGCAGTTAGAAGTCCATCTGCTAGGGAGAGATCTACCTCCTGACCTAATGAAGCAAGTGGTTAAGAATTTTGGTCCCGATCTCCATGGGCTAAAAGAGAAGGTACCTGGGGCAGATCCTATACTCGACACACGCCGCCAGATTATTTGTCTTCGTGGCAACAAGGAGCTGAAACCAAGAGTGCAGGAAATAATTTTCGAGACTGCACATTCATGTGATTCTTTGGTTCAGAGACTTCACAATGGACCTACTTGCCCAATTTGCTTGTGTGAGGTTGAAGATGGAGTGCGGCTTGAAGGCTGTGGTCATTTGTTCTGCCAGCTTTGTCTGGTGGAGCAATGTGAATCTGCTATACGGAACCTCGGCAGCTTCCCAATATGTTGTGCTCACGAGGGCTGTGGACATCCCTTTCTTATTGCAGATTTGAGATCTCTCTTATCCCATGTTAAGTTAGATGAACTTTTCAAGGCTTCTTTGGGAGCTTTCGTGGCCTCAAGTGGAGGAACTTACAGGTTTTGCCCATCTCCTGACTGCCCCTCGATTTATCGTGTTGCTGATCCCGATACACCTGGTGAGCCATTTGCTTGTGGGGTATGCTACTCAGAGACTTGTACCAGTTGCCACTTAGAGTATCATCCATATGTTTCATGCGAGAATTATCGAGAATTCAAGAAAGATCCCGACTCATCGCTGAAGGAGTGGTGCAAGGGGAAAGAACATGTTAAGTGTTGCCCAGTGTGTGGGTTTACAATTGAGAAGGTTGATGGGTGCAACCACATAGAATGCAAGTGTGGAAAGCATGTGTGCTGGTCTTGCTTGGAGTATTTTGAAAGCAGTGACGATTGTTACAACCATTTGAGAAATATACACATGACCATCATATAA 5262 0.4268 MNTFNQPSSGVTTRHHNFNSHHQPPQQPPPSHGAQTSHPPHHSLHHWNPGVNPPDKTSTTLRRPNFVITLRTGRRSFRRDEIMALISECDSKPEFKKFPVGDRIAGKIGFRQWCDALDAVVWFWKTRLNEIHDLMPELTSYVKVPSDMYELERRLKALFSYHVKCLMNEGKEVKRLNVEIEQLSKEIDSICKVLSKPLPIPVYNQRVEKKKGLIAEKKLVDKRIREFKNAMECLVKKFEEEEEEEEEGENNKVLKDEESVVSVFKIEGKLDWKKVHCMIMRERKRLEQGLPIYAYRSDIIHQVHSHQVTVLIGETGSGKSTQLVQFLADSGISANESIVCTQPRKIASKSVSERVQEESSGCYGDNTIKSYSTFSSSHRFDSRITFMTDNCLLQHYMDDENLFGVSCIIIDEAHERSLNTDILLALIKSLLSRRVDMRLIIMSATADAEQLSNYFYGCGILHVLGRNFPVDVRYVPSDNTEHSGSAVIASYVSDVVRIATEIHKTEKEGSILAFLTSQVEVEWACDKFRDTSAVALPLHGKLSSEEQFHVFQNYSGKRKVIFATNLAETSLTIPGVKYVIDSGFVKDCRFDPSSGMSVLKVCRISQSSALQRAGRAGRTEPGRCYRLYSEADFQSMEPTQEPEIRRVQLGVAVLRILALGVKNVQEFDFVDAPSSRSIEMAIKNLIQLGVIRLNKNLHELTHEGRYLVRMGVEPRLGKLILGCSRYGMGREGVVLAALMANASTIFCRVGKEDDKQRSDCHKVQFCHCDGDLFTLLSVYKEWEALPRDRKNKWCWENSINAKSMRRCQDTVVELESCLERELCLVTPQYWQWNPSKPSDYDEHLKKIILASLAENVAMYSGCDQLGYEVAQTGQLVQLHPSCSLRVYAQKPSWVVFGELLSVSNQYLACVTAFDFDSLYNLSPPPPFDVSKMEKKKLQMRRLTGLGSILLKRLCGKGNSSVLGLVSRIRKACRDDRIVVEVNVGQNDIQLYATSHDMETALGLLNDVLEYEKKLLYTECVEKCLYHGFSPSVALFGSGAEIKHLELEKRFLCIDVSHPNINAIDDTQLLMFFENTSGDICSVQKFTYMAKDAEEREKWVKITFLSPDAAEKAADLDGVEFCGFPLKVVPSRIAVGGDKTLSFPAVKAKISWLRRPSKGFGILKCDVNDVNFILGDFYNLAIGGRYVRCDASTKSADCITIGGIDKELSESEILDELKAATSRRILDFFLLRGDAILNPPCSVFEEALLKEISPFMPNINPHISSCRVQVFPSEPRDTFMKALITFDGRLHLEAAKALEQIEGKVLPVCFTWQKIKCERMFHSSLVLPVPVFSVIKEELEKVLSRFKNVKGLELIVDRFTNGSRRVRITANATKTVAEVRRQLEELSRGKTVEDDNLTPIVLQHMLTKDGFNVKNSLQEETGTYIFLDKHNLSIQVFGPPDKVAFAKQKLVQLLLSLHERKQLEVHLLGRDLPPDLMKQVVKNFGPDLHGLKEKVPGADPILDTRRQIICLRGNKELKPRVQEIIFETAHSCDSLVQRLHNGPTCPICLCEVEDGVRLEGCGHLFCQLCLVEQCESAIRNLGSFPICCAHEGCGHPFLIADLRSLLSHVKLDELFKASLGAFVASSGGTYRFCPSPDCPSIYRVADPDTPGEPFACGVCYSETCTSCHLEYHPYVSCENYREFKKDPDSSLKEWCKGKEHVKCCPVCGFTIEKVDGCNHIECKCGKHVCWSCLEYFESSDDCYNHLRNIHMTII 1753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1308 1753 ProSitePatterns Zinc finger C2H2 type domain signature. 1728 1749 IPR013087 -
Lal21g1308 1753 Coils Coil 166 193 - -
Lal21g1308 1753 Gene3D - 467 639 IPR027417 -
Lal21g1308 1753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 660 IPR001650 -
Lal21g1308 1753 SUPERFAMILY RING/U-box 1542 1602 - -
Lal21g1308 1753 ProSiteProfiles Zinc finger RING-type profile. 1544 1586 IPR001841 -
Lal21g1308 1753 ProSiteProfiles TRIAD supradomain profile. 1540 1748 IPR044066 -
Lal21g1308 1753 SUPERFAMILY RING/U-box 1698 1744 - -
Lal21g1308 1753 Pfam Helicase conserved C-terminal domain 501 619 IPR001650 -
Lal21g1308 1753 MobiDBLite consensus disorder prediction 1 22 - -
Lal21g1308 1753 Gene3D - 233 466 IPR027417 -
Lal21g1308 1753 ProSitePatterns Zinc finger RING-type signature. 1560 1569 IPR017907 -
Lal21g1308 1753 SMART ultradead3 288 473 IPR014001 -
Lal21g1308 1753 Coils Coil 224 251 - -
Lal21g1308 1753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 300 464 IPR014001 -
Lal21g1308 1753 CDD DEXHc_RHA-like 306 463 - -
Lal21g1308 1753 SMART helicmild6 522 620 IPR001650 -
Lal21g1308 1753 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1574 1669 - -
Lal21g1308 1753 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 104 1505 - -
Lal21g1308 1753 CDD SF2_C_RHA 468 628 - -
Lal21g1308 1753 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 844 923 IPR011709 -
Lal21g1308 1753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 797 IPR027417 -
Lal21g1308 1753 CDD RRM_SF 1063 1127 - -
Lal21g1308 1753 SMART ibrneu5 1611 1676 IPR002867 -
Lal21g1308 1753 SMART ibrneu5 1683 1741 IPR002867 -
Lal21g1308 1753 Pfam IBR domain, a half RING-finger domain 1620 1676 IPR002867 -
Lal21g1308 1753 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 406 415 IPR002464 -
Lal21g1308 1753 Pfam Helicase associated domain (HA2) 681 775 IPR007502 GO:0004386
Lal21g1308 1753 MobiDBLite consensus disorder prediction 1 64 - -
Lal21g1308 1753 PANTHER ATP-DEPENDENT RNA HELICASE 1574 1669 - -
Lal21g1308 1753 PANTHER ATP-DEPENDENT RNA HELICASE 104 1505 - -
Lal21g1308 1753 Gene3D - 642 685 IPR042035 -
Lal21g1308 1753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1540 1619 IPR013083 -
Lal21g1308 1753 SMART ha2_5 680 776 IPR007502 GO:0004386
Lal21g1308 1753 Gene3D - 1673 1750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1308 Lal-Chr21 16372863 16379278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1308 1544 1735 C3H Transcription Factor Family AT2G31770 27.363 2.29e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1308 K12818 - gmx:100810008 2451.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1308 21 16372863 16379278 Lal17g1640 17 17716894 17724751 LSH