Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1307 ATGAAGAGATCACTTGGTAACTCTGATTCTTTGGGTTCTCTCATCACAATCTCTTCATCCACAACAGAGGAACAAAGTTTGAGGAATAACAAAAACAACAAGTATACTAAGGAGTTTCAATCAATGTTGGATGAAATTGATGAAGAATGTACTATTTCAGAGAAGAAACGTAGACTTGGTGTGAATCAAGTGAAGGCTTTAGAGAAGAATTTTGAGGTTGAAAATAAGCTTGAACCTGAAACAAAGGTGAAACTTGCACAAGAACTTGGGTTACAACCTAAACAAGTAGCTATTTGGTTCCAAAACCGTAGAGCTAGATGGAAAACTAAGAATATGGAAAGAGATTATGGTGTCCTTAAAGCTAATTATGATTCTCTTAAGCTTAACCATGATGCCCTTAAACATGACAATGAAGCTTTACTCAAGAAGATTAAAGAATTGAAATCAAAGTTGCAAGAAAAAAACAATGCAAATGATATTTCAGTGAAGGAAGAAACAATGAAGCCTCATGAGTCTGAATCTGAAGACAAAATAATTGAACAGTGTAATAATCCTATATCAGATTCCAAGAATCACTTAAATTATGAAGCAAGATCACTTTTTCCATCATCAGATTTCAAAGATGTTGCTTCTGATAGTGACTCTAGTGCAATCTTGAATGAAGATAACAATTCCAAAGCCACATTTTCTTCATGTGGGGTACTCCAAAATCATCATTTTTTGATGTCTAATGAATCATCTTCTTCACTTTCTTCAATGAATTGCTTTGAGTTTGAGAAATCTTACCAAGCTACACAGTATGTGAAGATGGAAGAGTATAACTTCTTTAGTTCAGAAGAGGCATGCAATTTTTTCTCTGATGAACAAGCACCAACAATGCATTGGTATTCTTCTAATCAATGGAGTTCATAA 912 0.3388 MKRSLGNSDSLGSLITISSSTTEEQSLRNNKNNKYTKEFQSMLDEIDEECTISEKKRRLGVNQVKALEKNFEVENKLEPETKVKLAQELGLQPKQVAIWFQNRRARWKTKNMERDYGVLKANYDSLKLNHDALKHDNEALLKKIKELKSKLQEKNNANDISVKEETMKPHESESEDKIIEQCNNPISDSKNHLNYEARSLFPSSDFKDVASDSDSSAILNEDNNSKATFSSCGVLQNHHFLMSNESSSSLSSMNCFEFEKSYQATQYVKMEEYNFFSSEEACNFFSDEQAPTMHWYSSNQWSS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1307 303 CDD homeodomain 55 111 IPR001356 GO:0003677
Lal21g1307 303 Pfam Homeobox associated leucine zipper 110 152 IPR003106 GO:0006355|GO:0043565
Lal21g1307 303 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Lal21g1307 303 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Lal21g1307 303 MobiDBLite consensus disorder prediction 1 33 - -
Lal21g1307 303 Gene3D - 32 117 - -
Lal21g1307 303 MobiDBLite consensus disorder prediction 152 176 - -
Lal21g1307 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 294 - -
Lal21g1307 303 SUPERFAMILY Homeodomain-like 49 111 IPR009057 -
Lal21g1307 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 294 IPR045224 GO:0003700
Lal21g1307 303 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Lal21g1307 303 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Lal21g1307 303 Pfam Homeodomain 55 108 IPR001356 GO:0003677
Lal21g1307 303 Coils Coil 123 164 - -
Lal21g1307 303 SMART HOX_1 53 114 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1307 Lal-Chr21 16352170 16355138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1307 1 301 Homeobox Transcription Factor Family AT2G22430 43.440 1.62e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal21g1307 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1307 K09338 - pop:18100934 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1304 14 14663791 14666455 Lal21g1307 21 16352170 16355138 PCT