Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1283 ATGACTCAGAAGCAGAATGTGATAGTGTCTGAAACCAAATCTGAAGTTGTGGCACAAAATAAGCCACTTGGAGGAGGGTACATTTCCATTTCAAGAAGTAGTATTATTTTGAAGAACCTTGAAATAATCAATGGTGGTGGTGGTGGAGGAGGAAGAGTTAATGGTTGGATTGAGTCCATGAAAGCTTCTTCTCCAACACATCCTTCTTTGTCTCAAGACCAAACATCTTGGATTGTTCAGCATCCATCAGCATTAGACATGTTTGACCAAATTATGGAATCATCAAAGGGAAAGCAAATAGTGATGTTTCTAGACTATGATGGTACACTCTCCCCTATAGTGGAAGACCCTGACCGTGCATTCATGTCCAATTCGATGAGAAAAACAGTGAGGAAACTAGCAAGGTGTTTCCCAACAGCTATAGTGACTGGTAGATGCAAAGACAAGGTGTACAATTTTGTTCGTTTGGGAGAGTTATACTATGCTGGAAGCCATGGTTTAGACATTAAAGGGCCAACTAGAACCTCCAAGTACAACAAAGATAGGAAAGGAGAGACACTTCATTTTCAACCTGCTAGTCAATTTCTTCCAATGATTGATGAGGTGTACCAAAGATTGGTTGATAAGACAAAATCAGTTCCTGGAGCCATGGTGGAGAATAACAAGTTCTGTGTCTCTGTTCATTTTCGTTGCGTTGATGAAAAGAAATGGAGTGAACTAGCACACCAAGTGAAATTAGTTTTAAAGGACTACCCCAAACTTCGTCTCACCGAAGGAAGAAAGGTACTAGAGATTCGTCCTACTATTAAATGGGACAAAGGAAAAGCCTTGGAATTTTTATTGGAGTCACTTGGATTAGCCCACTGCAGTGATGTCTTCCCTGTATATATTGGTGATGATCGAAGTGATGAAGATGCTTTTAAGAAATTAAGAGACAGAGGACAAGGTTTTGGTATTCTTGTCTCGAAATTCCCAAAGGAAACAAATGCATATTACTCTTTACAAGAACCCAAAGAGGCAAGTGATGGACTTTCTTCAACGTTTGGTAGAGTGGAAAGAAGTTTCACTAAATACACATTCTCGGGTATAAATGTGTAG 1098 0.3962 MTQKQNVIVSETKSEVVAQNKPLGGGYISISRSSIILKNLEIINGGGGGGGRVNGWIESMKASSPTHPSLSQDQTSWIVQHPSALDMFDQIMESSKGKQIVMFLDYDGTLSPIVEDPDRAFMSNSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLGELYYAGSHGLDIKGPTRTSKYNKDRKGETLHFQPASQFLPMIDEVYQRLVDKTKSVPGAMVENNKFCVSVHFRCVDEKKWSELAHQVKLVLKDYPKLRLTEGRKVLEIRPTIKWDKGKALEFLLESLGLAHCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKETNAYYSLQEPKEASDGLSSTFGRVERSFTKYTFSGINV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1283 365 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 345 IPR044651 GO:0004805|GO:0005992
Lal21g1283 365 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 102 313 IPR006379 -
Lal21g1283 365 Pfam Trehalose-phosphatase 103 337 IPR003337 GO:0003824|GO:0005992
Lal21g1283 365 CDD HAD_TPP 101 331 - -
Lal21g1283 365 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 1 345 - -
Lal21g1283 365 SUPERFAMILY HAD-like 101 340 IPR036412 -
Lal21g1283 365 Gene3D - 182 268 - -
Lal21g1283 365 TIGRFAM T6PP: trehalose-phosphatase 98 339 IPR003337 GO:0003824|GO:0005992
Lal21g1283 365 Gene3D - 102 334 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1283 Lal-Chr21 16103889 16108645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1283 89 310 Trehalose Biosynthesis Gene Families AT1G23870 24.675 3.50e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1283 K01087 - gmx:100794430 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1608 4 20274489 20278435 Lal21g1283 21 16103889 16108645 LSH
Lal21g1283 21 16103889 16108645 Lal17g1621 17 17578966 17583424 LSH