Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1274 ATGGTTTCTAGAGAGCAAAAGAGAACAACAACAATGCATGAAAAGCTTCAACTTCTTCGTTCTATCACTAACTCCCATGCTTCAAGCAAAACCTCGATCCTAAATGATGCATCAAAGTATATAGAAAAACTGAAGAAAAAGGTGGAAAGACTGAATCAAGACATGGCCACTGCACAAACTTCAAGTGACCAAAATTCTTTGCCTATGGTTACAGTAGAAACCCTAGGAAAGGGATTTATTGTAAATGTTATGTCAGAAAATAGCTGCCCAGGATTACTTGTTTCAATATTGGAGGCATTTGAAGAGATAAATCTTAATGTGTTGGATGCTAGAGTTTCTTGTGCAGATACTTTTCGATTTCAAGCAATTGCAGAAAATGAAGAAGAAGGTGAGGGTGTTGATGTAGAAGGTGTGGAACAAGCAGTGGAACAAGCAATCAAGAACTGGAATGAAAGTATTGATCAACAATAA 471 0.3694 MVSREQKRTTTMHEKLQLLRSITNSHASSKTSILNDASKYIEKLKKKVERLNQDMATAQTSSDQNSLPMVTVETLGKGFIVNVMSENSCPGLLVSILEAFEEINLNVLDARVSCADTFRFQAIAENEEEGEGVDVEGVEQAVEQAIKNWNESIDQQ 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1274 156 Gene3D - 2 72 IPR036638 GO:0046983
Lal21g1274 156 PANTHER TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN 1 154 - -
Lal21g1274 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 154 - -
Lal21g1274 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 65 IPR036638 GO:0046983
Lal21g1274 156 Coils Coil 34 61 - -
Lal21g1274 156 CDD ACT_UUR-ACR-like 90 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1274 Lal-Chr21 15982908 15986415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1274 5 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 29.139 6.15e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1274 - - tcc:18600910 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0659 3 5146772 5153474 Lal21g1274 21 15982908 15986415 LSH
Lal21g1274 21 15982908 15986415 Lal22g0200 22 1249704 1251233 PCT
Lal22g0200 22 1249704 1251233 Lal21g1274 21 15982908 15986415 PCT